Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1424 ATGGGTGACATGAAGGACAAGGTCAAGGGTTTCATGAAAAGGGTTAATAATTCCTTGTCCTCGTCTTCTTCTGCAAGTTTCAAGGGTCAGGGAAGAGTTTTAGGATCCTCTTCTTCGGGGTCGACTACTTCTTCTTTGCCTACCCGCCCATCGCAAAATCCCATTTCAAAACCCAAGCTGGTTCATCCTCCTTCAGATTCTACCGTAAATTCCAAGCCTCCGTCTTCAAATTCAACCGGCGCTGGTCAGATTAGGTCAGAAGTGCCTAGTAAATCGAACCCAGATCGAAAACCGCCGGCCGATGAATTTGACCCATTTGACTCGTTTATAACGTCTGGGAAAAGATCTGGAAATGGGTATTCATTAGATGTGTTTGAATGTCCGATTTGTGGCCAAAGTTACAGGTCTGAAGAGGAGGTTTCTGTGCACGTAGATAGCTGTGTCAATAATAACACAGCCGATAGAGCAGAGGATCTGCCCACGAGTAATTCGGAATCTCGGAGTGAATTGGAGACTTGTGTTGGCACTTTCATATCAGGGAAGCCATCACAAGGTTCATTGGAAATTGTGCTGAAGCTTATGAGGAACATAGTTCGGGAACCAGAGAATTCAAAGTTTAGGAAGATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATCGGTGAGGCTGTGGGGGGAGTGGAATTGTTGGAGTTTGTGGGTTTTAAATTGCAAGAAGAAGATGGTGAAATGTGGGCAACCATGGAAGTTCCAACAGAGGAAGAGATTTACAGATTATCTAAGGTCGTTGATTTTATTGAACGGCCAAAGCTTGATGAACGGCAAAATGAAGGCAGCTCTGCATCTATGGCTTCAACTCAGGTTGATGAACTGATTGAACCAAAGAAGGTAGACAGACAGACTCGAGTATTTTTTGCTGTCCCTGAAAACGTTGCTGCAAACATCGAGCTACCAGACTCCTTCTACAACCTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAGCAAAAGATTGCTGAATCTCAGTTTTTGGTTCCTAAATCATACAAGGAGAAACAAGCAAAAGCTGCTCGGAGAAAGTACACAAGAACAGTTATCAGAATTCAGTTTCCCGACGGCGTGGTACTTCAAGGTGTTTTTTCTCCTCGGGAACCAACAAGCGCTGTATATGAGTTTGTGAGCTCAGCACTGAAAGAACCCGGTTTGGAATTCGAGTTGATACATCCAGTTGGTGTTAAACGGCGTACGATCAGTCATTTTCCCGTAGGACAGAAGGCTAAAACTCTAGATGATGAGGAGTTGGTCCCCTCAGCTCTGGTCAAGTTTAGACCCATTGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTAATGAACTCCTTGAGATTATCGAACCGCTCGTTAGCAGTTCAGCTGTGGCTCATCCAGCGCAAGTTTAA 1443 44.28 MGDMKDKVKGFMKRVNNSLSSSSSASFKGQGRVLGSSSSGSTTSSLPTRPSQNPISKPKLVHPPSDSTVNSKPPSSNSTGAGQIRSEVPSKSNPDRKPPADEFDPFDSFITSGKRSGNGYSLDVFECPICGQSYRSEEEVSVHVDSCVNNNTADRAEDLPTSNSESRSELETCVGTFISGKPSQGSLEIVLKLMRNIVREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFVGFKLQEEDGEMWATMEVPTEEEIYRLSKVVDFIERPKLDERQNEGSSASMASTQVDELIEPKKVDRQTRVFFAVPENVAANIELPDSFYNLSVEEVKREAIMRKQKIAESQFLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPREPTSAVYEFVSSALKEPGLEFELIHPVGVKRRTISHFPVGQKAKTLDDEELVPSALVKFRPIETDSVVFTGLRNELLEIIEPLVSSSAVAHPAQV 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17707418 17711183 + MC04g0979 Mch4g1424 686136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1424 480 Pfam UBX domain 362 441 IPR001012 GO:0005515(InterPro)
Mch4g1424 480 MobiDBLite consensus disorder prediction 63 89 - -
Mch4g1424 480 FunFam UBX domain-containing protein 6 355 445 - -
Mch4g1424 480 Gene3D - 179 268 - -
Mch4g1424 480 Gene3D - 355 446 - -
Mch4g1424 480 CDD UBX_UBXN6 366 445 - -
Mch4g1424 480 CDD PUB 176 268 - -
Mch4g1424 480 SMART c2hc_5 124 148 IPR006642 GO:0003677(InterPro)|GO:0006281(InterPro)
Mch4g1424 480 MobiDBLite consensus disorder prediction 1 110 - -
Mch4g1424 480 MobiDBLite consensus disorder prediction 14 55 - -
Mch4g1424 480 SMART ubx_3 358 446 IPR001012 GO:0005515(InterPro)
Mch4g1424 480 SUPERFAMILY PUG domain-like 183 245 IPR036339 -
Mch4g1424 480 SUPERFAMILY Ubiquitin-like 332 444 IPR029071 -
Mch4g1424 480 ProSiteProfiles UBX domain profile. 361 444 IPR001012 GO:0005515(InterPro)
Mch4g1424 480 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 471 - GO:0050832(PANTHER)
Mch4g1424 480 Pfam PUB domain 184 249 IPR018997 -
Mch4g1424 480 SMART PGNneu 185 252 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43196 PF00789 UBX 1.90E-07 CL0072 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1424 K14011 - csv:101209321 745.347