Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1433 ATGAAAATATTACACCATCTTCTTCTCATTTCCTTGCTAGTCATCCATGGAAGAAGCTCCACTAATCTCATGTCTTGCTCCCAAACCCCATATCCAGACCTCTGCTTCCATTTCGTCAACCAAAACGACGACGATGCTGATGCCATATCGACCTTCGGCGACGAAACTTCTTATGTAACTCGCTTTCGAAACTCCGCCATTCGGGCCACTCTCAACCAAGCCATGACAACCCACGCCCACCTTCTCTCTAACATGGATTCAGATGCCTTTGATTATAGAGCTAAATCAGCTTTGGTGGACTGTTTGGAGCTCTACGAGGATTCGATCGCCGAACTCAACCGTTCGACGATCGACTCGACCACAATGGATCACCTGACATTGCTAAGCGCTTCGATGGCAAACCATCAAACATGTGAAAATGGGTTCCGAGATTTTGGGATTTCTTTTCCGTTTGAAATTCTCAGTAATTTCTCGAAATTGGTCAGCAATTCTCTGGCCATCGCCAGGGCCGCCGCGGGTGGTGGTGATAATAATGCAGCTGCTTCGGCCGAGTGGGTGGAGCTTGTGCAGGGCAGTGCGGCGGCGGCGGATATGGTTGTGGCCCAAGATGGGAGCGGCGATTTCAGGAGCATATCGGAGGCGGTGGCGGCGGCGGAGGTGAGGAAGGGAAGCGGAGGTGGTGGTAGGTTTGTAATATATGTAAAAGGCGGCGTTTACAGAGAAAATGTTGTGATTAAGAAGACGATGAAGAATGTTATGATGATCGGAGATGGGATTGGTTCCACCATCGTGACTGCCATGAAAAACGTCCAAGATGGATCCACCACTTTCCGATCACCCACTTTTGCGGTGACCGGCAATGGGTTCATTGCCAGAGATATGACGTTCGAGAACATGGCGGGGCCGGAGAAACTCCAAGCCGTCGCGGTTCTATCGAGCGCCGACCACTCAGTTTTCTACCGCTGCAGCTTCAGAGGCTATCAAGACACATTATACGCCCACTCCAAGCGCCAATTCTACCGCGAGTGCGAAATTTATGGAACTGTCGACTTCATATTCGGCGACGCCACCGCCGTATTTCAGAACTGCAATATCTTTGTTAGAAAGCCTATGAGGAACCAAAAAAATACCGTGACGGCGCAGGCGAGGTCCGACCCGAATGAGAACACTGGGTTCGTGATCCACAATTCAGCGGTCGGAGCGGCGCCGGACCTGAAACCGGTGGAGGGTCTGTACGAAACTTATTTGGGGAGGCCGTGGAAGGCGTATTCGAGGACGGTTGTAATGAGGAGTTCTTTGGACGGTCTGGTTGAACCGGCCGGGTGGCTTCCTTGGGCGGGGGATTTCGGTCTTAGGACGGTTTATTATGGCGAGTTTATGAACACCGGCGATGGGGCGAGCACGATGGGGAGGGTGCGGTGGCCAGGGTATCATGTGATGACGAGTGTTGCGGAGGCCGGGAGGTTTACGGTGGATAACTTTTTGGCCGGAAGTGGTTGGATTCCGGCCACCGGCGTGCCGTTTGCAAATGGGTTGTGA 1539 52.31 MKILHHLLLISLLVIHGRSSTNLMSCSQTPYPDLCFHFVNQNDDDADAISTFGDETSYVTRFRNSAIRATLNQAMTTHAHLLSNMDSDAFDYRAKSALVDCLELYEDSIAELNRSTIDSTTMDHLTLLSASMANHQTCENGFRDFGISFPFEILSNFSKLVSNSLAIARAAAGGGDNNAAASAEWVELVQGSAAAADMVVAQDGSGDFRSISEAVAAAEVRKGSGGGGRFVIYVKGGVYRENVVIKKTMKNVMMIGDGIGSTIVTAMKNVQDGSTTFRSPTFAVTGNGFIARDMTFENMAGPEKLQAVAVLSSADHSVFYRCSFRGYQDTLYAHSKRQFYRECEIYGTVDFIFGDATAVFQNCNIFVRKPMRNQKNTVTAQARSDPNENTGFVIHNSAVGAAPDLKPVEGLYETYLGRPWKAYSRTVVMRSSLDGLVEPAGWLPWAGDFGLRTVYYGEFMNTGDGASTMGRVRWPGYHVMTSVAEAGRFTVDNFLAGSGWIPATGVPFANGL 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 17781567 17784382 + MC04g_new0447 Mch4g1433 686145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1433 512 Gene3D - 191 512 IPR012334 -
Mch4g1433 512 Pfam Plant invertase/pectin methylesterase inhibitor 25 167 IPR006501 GO:0004857(InterPro)
Mch4g1433 512 Pfam Pectinesterase 197 497 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch4g1433 512 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 169 IPR035513 -
Mch4g1433 512 ProSitePatterns Pectinesterase signature 1. 226 245 IPR018040 -
Mch4g1433 512 SMART PMEI_2 19 167 IPR006501 GO:0004857(InterPro)
Mch4g1433 512 SUPERFAMILY Pectin lyase-like 191 510 IPR011050 -
Mch4g1433 512 CDD PMEI-like_3 25 165 - -
Mch4g1433 512 ProSitePatterns Pectinesterase signature 2. 345 354 IPR033131 -
Mch4g1433 512 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 170 IPR035513 -
Mch4g1433 512 PANTHER PECTINESTERASE 10 503 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch4g1433 512 NCBIfam pectinesterase inhibitor domain 3 168 IPR006501 GO:0004857(InterPro)
Mch4g1433 512 FunFam Pectinesterase 191 512 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1433 Mch-Chr4:17781567 Mch6g2635 Mch-Chr6:28118747 2.52E-158 dispersed
Mch4g1433 Mch-Chr4:17781567 Mch6g1850 Mch-Chr6:21011905 3.33E-132 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1433 - - - 0.0