Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1448 TTCTCGCCGGCGACCATGTCTGAGTCCCAACATGCTCCTCTCCTGCGCTCCCGTCAGCCCTCCGACTCCTCCGTCGGCCCCTTCGCCCTTCTCCTCGGCCGCCTCACTGGCCGCCGTGGGACTTCCATGGCCGTTCGGGAGACGGCCGCGCGCGAACTTGAGGAGCGCCGCATGGATTGGGGCTACTCCAAACCCATCGTCGCGCTTGACATTGCATGGAATTTGGCTTTCGTTGTCGTTTCGCTGGTTGTGCTTTTTCACTCGGTCGATGAGAAACCCAATATGCCGATTCGGCTTTGGATCGTGGTTTATGCGGTTCAGTGCTTGGTGCACGTTGTGCTAGTTTGGTTAGAGTTCAGAAGGAGGAATGCGAGGAGGGCTAGGGTGTCGGAGACGCAGCAACGGCCGCAGCCTGATGGGTATTTTGATAATGTTAGCGATGAAGAAGATGGTAGCTCGAGGAATCTATCCAGTGTTGTCAAAAGATATGAGTCAGTGAACACCATGGTTTCGTTTATCTGGTGGATGGTTGGCTTTTACTGGATCGTGGCTGGTGGTAACATCCTCGTGCAGAATGCTCCATCTTTATACTGGATGGCTGTCATATTTCTGACATTCGACGTGCTCTTTGCCATCTTTTGTGTTGTTTTGGCATGTTTGATTGGCATTGCTCTTTGTTGCTGCTTGCCTTGCATTATAGCTATTCTTTATGCTATTGCTGGCCAGGAAGGTGCATCCGATGCAGATTTGAGTATGCTTCCCAAGTATAGATATCAAGTCTCCAACAAGCCTTCTCGGGGGGATGGGGTGATGGTTCCAGTAGAAACAAGTAGTAGATACTTGACGACCGAACGTGTTCTGTTACATGAGGATGCGGAGTGCTGTATATGCCTTAGTCCATACGAGGATGGAGCCGAGCTTCATGCTCTTCCCTGCAATCACCATTTTCATTATGTGTGCATCACAAAATGGCTCAAGATGAATGCAACATGTCCTCTGTGCAAGTACAACATTCTCAAAGATTGTGGACCCGTGTAA 1038 50.48 FSPATMSESQHAPLLRSRQPSDSSVGPFALLLGRLTGRRGTSMAVRETAARELEERRMDWGYSKPIVALDIAWNLAFVVVSLVVLFHSVDEKPNMPIRLWIVVYAVQCLVHVVLVWLEFRRRNARRARVSETQQRPQPDGYFDNVSDEEDGSSRNLSSVVKRYESVNTMVSFIWWMVGFYWIVAGGNILVQNAPSLYWMAVIFLTFDVLFAIFCVVLACLIGIALCCCLPCIIAILYAIAGQEGASDADLSMLPKYRYQVSNKPSRGDGVMVPVETSSRYLTTERVLLHEDAECCICLSPYEDGAELHALPCNHHFHYVCITKWLKMNATCPLCKYNILKDCGPV 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18000801 18005860 - MC04g0997 Mch4g1448 686160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1448 345 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
Mch4g1448 345 SUPERFAMILY RING/U-box 280 341 - -
Mch4g1448 345 PANTHER TARGET OF ERK KINASE MPK-1 37 338 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Mch4g1448 345 SMART ring_2 294 334 IPR001841 -
Mch4g1448 345 FunFam E3 ubiquitin protein ligase RIE1 274 342 - -
Mch4g1448 345 CDD RING-H2_PA-TM-RING 293 335 - -
Mch4g1448 345 MobiDBLite consensus disorder prediction 1 23 - -
Mch4g1448 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 341 IPR013083 -
Mch4g1448 345 MobiDBLite consensus disorder prediction 130 153 - -
Mch4g1448 345 Pfam Ring finger domain 293 335 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1448 Mch-Chr4:18000801 Mch5g0362 Mch-Chr5:2480601 1.06E-101 dispersed
Mch4g1448 Mch-Chr4:18000801 Mch5g1335 Mch-Chr5:14304949 6.73E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1448 - - - 0.0