Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1467 ATGGGTATGAAAATGCAGCAAAGTCACAATTCTGTGGCCATGAAGTGGAATGAGCAAATGGGAACAACAAAGAAGGGCTACACATTTGTTCAAGCTAACAGGGCTTGGCTTCGAAAGTATCTTCTGCTCTGGATTATGGGGATGGCGTTTATCAGTATGATAATCTATAATGGAATGGATGCTGATAATAAAGTGAGAAGGAACGAAGTGTTGGAGAGCATGTGTGAGCAGAGGGCAAGGATGTTGCAGGATCAATTCAGTGTTAGTGTTAACCATGTTCATGCCTTGGCTGTCCTTGTTTCCACCTTTCATTACTTCAAGAACCCTTCTGCAATTGATCAGGAAACTTTTGCCGAATACACAGCCAGAACTGCTTTCGAACGGCCTCTTCTCAGTGGGGTGGCATATGCTCAAAGAGTGGTTCATTCAGAGAGGGAGATATTTGAAAAGCAACATGGGTGGATGATAAAAACAATGAAAAGAGAACCTTCGCCGATTCGTGATGAATATGCACCAGTGATATTTTCTCAAGAAACAGTCTCTTACATCGAATCACTGGATATGATGTCAGGAGAGGAGGACCGTGAAAATATTTTGAGGGCTAGAGCAACAGGGAAGGCTGTTTTAACGAGCCCCTTCAGGCTGCTAGGTTCTCATCATCTTGGAGTTGTTTTGACGTTCCCTGTTTACAAATCCAAATTGTCATCAAAACCAACCGAAGAAGAACGTATACAAGCAACAGCAGGCTATGTTGGTGGGGCGTTTGACGTCGAGTCCCTCGTGGAGAACTTACTAGGCCAGCTTGCTGGGAATCAAGCCATTTTGGTGAATGTATATGATATCACAAACTCTTCTGATCCCCTTGTCATGTATGGCCATCAATATCACGATGGTGACCTGTCTCTTTTGCATGAGAGTAACCTTGATTTTGGAGATCCATTCAGGAAGCATCTGATGGTTTGTAGATATCAGCAGAAGGCTCCCACATCCTGGACTGCTCTAACTACTGCATTCTTATTCTTCGTGATTGGGTTATTAGTTGGCTACATTTTGTACGGTGCAGCCACTCACATTGTGAAGGTTGAAGATGATTTCCATAAGATGCAAGTTCTGAAAGTTCGAGCGGAAGCTGCTGATGTAGCAAAATCCCAGTTTCTTGCAACTGTTTCCCATGAAATTAGGACACCAATGAATGGCATCCTCGGAATGCTTGCTCTGCTTCTGGATACAGATTTAAGTTCAACTCAGAAGGATTATGCTCAGACTGCTCAGGCTTGTGGAAAGGCACTGATCCAATTAATTAATGAGGTTCTTGACCGAGCAAAAATTGAAGCTGGAAAGTTAGAACTGGAAGCAGTTCTGTTCGACATTCGATCAATACTCGACGACGTCCTATCTCTATTTTCCGAGAAGTCCAGACAAAAGGGTCTGGAGCTGGCAGTCTTTGTTTCTGACAAAGTACCAGAAGTTGTGATTGGAGATCCAGGAAGATTCAGACAAATTATAACAAATCTTGTTGGTAACTCTGTTAAGTTTACCGAAAGGGGACATATATTTGTTAAAGTACAGCTAGCTGAGCACTCAAAAGGCTGCATTGACTCAAAATATGTCAATGGTACATCAGACAGTGACTTGTTCATATCTGGTGGTCGTGAATTTAAAACTTTAAGTGGATGTGAGGCGGCTGATGATCAGAACAGTTGGGATAACTTTAAACATCTAATTGCAGATGATAACTTCCAGTCGAATACTGCTTCAAACAACACAGAAGTAGCCGACGAGTGTTGTGGTCATGTTACTTTGATGGTAAGCGTGGAGGATACTGGAATTGGGATCCTTTTACAAGCCCAAGATCGAGTTTTCATGCCCTTCATGCAAGCAGATAGCTCGACCTCCCGAAACTATGGAGGAACAGGTATCGGCTTGAGTATCAGCAAATGTTTAGTTGAGCTGATGGGTGGTCAGATCAACTTCATAACCCGGCCTCAGATTGGAAGCACGTTTTCGTTCACTGCTGTTTTAGGGAAATGCAAGATAAACTCAATCAATGACATGAAAAAACCCAACTCTGAAGAAATTCCCCCAAGTTTTAGGGGAATGAAAGCCATAGTAGTTGACAGGAAACCAGTTAGAGCTTCTGTAACAAGATACCATTTGAAGAGACTTGGCATCATAGTTGAAGTCACCAATAGCATCAACTTGGCAGCTTCCTTTTGCAGAGAGAATGGTTCCACAATTCCAGGAAACACAATCCTTCCAGATATGATCTTAGTGGAAAAAGATACATTAACTTCTGATGAGGAATGTGGAATCATTCATCAACTGAACTGGAAACAGAACGGGAGTTCGTTGAAGTTACCGAAACTAATCCTTCTCGCTACGAACATTACCACTACAGAATTAGACAAGGCAAGGGCAGCAGGTTTTTCAGACACCGTGATCATGAAACCGTTAAGGGCAAGTATGGTGGCTGCCTGTCTTCAACAAGCACTTGGGGTTAAGAATCAGAGACGGGAAAGGTGCCTGCCAAATGGTTCTTCTTTCCTCCAGAGCCTTCTCTGTGACAAGAGAATCTTAATTGTTGATGATAACCGAGTAAACCGTCGGGTCGCTGCAGGCGCTCTGAAGAAATTCGGTGCAGATGTTGAGTGTGCAGATAGTGGGAAAGCTGCTCTGAAGTTACTTCAGCTACCACACAATTTCGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGATGGGTTTGAGGCGACTCGTCTTATCAGGATGATGGAGAGCAAGGCAAATGAAGTGGGAGGATCTGCAGCAGAAGGCAAGTGGCATGTACCGATATTAGCAATGACTGCAGACGTGATTCATGCTACGTATGATGAGTGCCTGAAATGCGGGATGGATGGCTACGTCTCGAAACCCTTCGAGGAAGAAAATCTATACAAGGAAGTAGCCAAGTTTTTCAAAAAACCATAG 2970 43.27 MGMKMQQSHNSVAMKWNEQMGTTKKGYTFVQANRAWLRKYLLLWIMGMAFISMIIYNGMDADNKVRRNEVLESMCEQRARMLQDQFSVSVNHVHALAVLVSTFHYFKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVHSEREIFEKQHGWMIKTMKREPSPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLSSKPTEEERIQATAGYVGGAFDVESLVENLLGQLAGNQAILVNVYDITNSSDPLVMYGHQYHDGDLSLLHESNLDFGDPFRKHLMVCRYQQKAPTSWTALTTAFLFFVIGLLVGYILYGAATHIVKVEDDFHKMQVLKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQKDYAQTAQACGKALIQLINEVLDRAKIEAGKLELEAVLFDIRSILDDVLSLFSEKSRQKGLELAVFVSDKVPEVVIGDPGRFRQIITNLVGNSVKFTERGHIFVKVQLAEHSKGCIDSKYVNGTSDSDLFISGGREFKTLSGCEAADDQNSWDNFKHLIADDNFQSNTASNNTEVADECCGHVTLMVSVEDTGIGILLQAQDRVFMPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQINFITRPQIGSTFSFTAVLGKCKINSINDMKKPNSEEIPPSFRGMKAIVVDRKPVRASVTRYHLKRLGIIVEVTNSINLAASFCRENGSTIPGNTILPDMILVEKDTLTSDEECGIIHQLNWKQNGSSLKLPKLILLATNITTTELDKARAAGFSDTVIMKPLRASMVAACLQQALGVKNQRRERCLPNGSSFLQSLLCDKRILIVDDNRVNRRVAAGALKKFGADVECADSGKAALKLLQLPHNFDACFMDIQMPEMDGFEATRLIRMMESKANEVGGSAAEGKWHVPILAMTADVIHATYDECLKCGMDGYVSKPFEEENLYKEVAKFFKKP 989
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18150559 18158754 - MC04g1013 Mch4g1467 686179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1467 989 SMART CHASE_2 108 293 IPR006189 -
Mch4g1467 989 FunFam Histidine kinase 4 112 327 - -
Mch4g1467 989 Pfam His Kinase A (phospho-acceptor) domain 381 446 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch4g1467 989 SUPERFAMILY CheY-like 855 985 IPR011006 -
Mch4g1467 989 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 370 447 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch4g1467 989 PANTHER TWO-COMPONENT HISTIDINE KINASE 29 986 IPR050956 -
Mch4g1467 989 Gene3D - 851 988 - -
Mch4g1467 989 ProSiteProfiles Response regulatory domain profile. 701 831 IPR001789 GO:0000160(InterPro)
Mch4g1467 989 SMART HisKA_10 381 446 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch4g1467 989 CDD HisKA 381 442 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch4g1467 989 ProSiteProfiles Histidine kinase domain profile. 388 676 IPR005467 -
Mch4g1467 989 Gene3D - 59 111 - -
Mch4g1467 989 Coils Coil 431 451 - -
Mch4g1467 989 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 599 671 IPR003594 -
Mch4g1467 989 SMART REC_2 856 982 IPR001789 GO:0000160(InterPro)
Mch4g1467 989 ProSiteProfiles Response regulatory domain profile. 857 986 IPR001789 GO:0000160(InterPro)
Mch4g1467 989 PRINTS Bacterial sensor protein C-terminal signature 601 615 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch4g1467 989 PRINTS Bacterial sensor protein C-terminal signature 619 629 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch4g1467 989 PRINTS Bacterial sensor protein C-terminal signature 636 654 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch4g1467 989 ProSiteProfiles CHASE domain profile. 108 320 IPR006189 -
Mch4g1467 989 SMART HKATPase_4 493 676 IPR003594 -
Mch4g1467 989 CDD HATPase_EvgS-ArcB-TorS-like 498 674 - -
Mch4g1467 989 Gene3D - 445 677 IPR036890 -
Mch4g1467 989 Pfam CHASE domain 111 291 IPR006189 -
Mch4g1467 989 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 435 671 IPR036890 -
Mch4g1467 989 Gene3D CHASE domain 112 327 IPR042240 -
Mch4g1467 989 FunFam Histidine kinase 4 353 444 - -
Mch4g1467 989 SUPERFAMILY CheY-like 696 833 IPR011006 -
Mch4g1467 989 CDD REC_hyHK_CKI1_RcsC-like 858 982 - -
Mch4g1467 989 Pfam Response regulator receiver domain 858 982 IPR001789 GO:0000160(InterPro)
Mch4g1467 989 Gene3D - 354 444 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0473 Mch-Chr11:3013763 Mch4g1467 Mch-Chr4:18150559 9.66E-50 dispersed
Mch4g1467 Mch-Chr4:18150559 Mch9g1183 Mch-Chr9:12702790 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43199 PF02518 HATPase_c 1.30E-31 CL0025 Mch TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1467 K14489 - csv:101209777 1793.86