Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1480 ATGCTGAAAGGGTGTTGTGGCAGCGGCGGTGGCGATCAAGAAGCTGCGTTTTTGGGCTCCAATTCTGAGAATAATGGGGTCACCAGCAAAAGAAAAAGAAGACCCGCGGGGACTCCAGATCCGGATGCGGAAGTGGTGTCGCTATCGCCGAAGACGCTGCTGGAGTCGGATCGGTACGTGTGCGAGATATGCAACCAGGGGTTCCAGAGGGAGCAGAATCTGCAGATGCACCGGCGGCGCCACAAGGTGCCGTGGAAGCTGCTGAAGAGGCCGGCGGCGGAGGCAGCGGAGGCGGCGAGGAAGAAGGTGTTCGTGTGCCCGGAGCCGAGCTGCCTCCACCACGACCCTTGCCACGCCCTCGGGGACCTCGTCGGGATCAAGAAGCACTTCCGGAGAAAGCACAGCAACCAGAAGCAGTGGGTCTGCCACAAGTGCTCCAAAGCCTACGCCGTCCACTCTGACTTCAAAGCTCACCTCAAAACTTGTGGCACCCGTGGCCACTCTTGTGACTGCGGTCGTGTCTTTTCCAGAGTGGAGAGCTTCATAGAGCACCAAGACGCTTGCAATCTCCGGCAAGTGAGGTCCGACGGCCAGTTGCAGGCGCCGCCGCTGCCGCCGCCAAACTACTACTCACGATCAATATCTTGCGGCGGCGCTTCCACTAGTAGTAATGATCATCATTATAATAGATTCAACATGAACAGTACTACTCCACTTCGAGGGTTCCCAATTTTGTCAAACCCAGATCGGAACATCAACATTAATTTACCCGACCACCATGATCTCGAGCTCCACCTCTCCTCTCCCAGCTCCGCCTTTCTCAAGCTCTCAATTGGCTCCACCTCCAATAATAATAATGTCGAGGCGAACGACGACGATCAGCAGCTCGAGCTGGCCATGGCCGAGAAGGCCTACGCCGACGAAGCGCGACGAGAGGCCAAACGACAGATCGAGATTGCCGAGGTGGAGTTCGCCAATGCTAAGATGATCCGGCAGCAGGCCCAGGCGGAGTTGGAGAAGGCCAAGATCTTGAAGGAGGAAGCCAGCCGGAAAATGACCTCCACCCTTATGGAAATCACGTGCCAAACTTGCCGCCACCACTTCCACATGGGCTCCGGTGCCGCTCCCGAGGAGACCTCCCTCGCCATCAGCTACATGTCGTCTGCCACGACCGAGGGAGATGGAGAGTGA 1191 57.35 MLKGCCGSGGGDQEAAFLGSNSENNGVTSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQREQNLQMHRRRHKVPWKLLKRPAAEAAEAARKKVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNQKQWVCHKCSKAYAVHSDFKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNLRQVRSDGQLQAPPLPPPNYYSRSISCGGASTSSNDHHYNRFNMNSTTPLRGFPILSNPDRNININLPDHHDLELHLSSPSSAFLKLSIGSTSNNNNVEANDDDQQLELAMAEKAYADEARREAKRQIEIAEVEFANAKMIRQQAQAELEKAKILKEEASRKMTSTLMEITCQTCRHHFHMGSGAAPEETSLAISYMSSATTEGDGE 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18319755 18322305 + MC04g1023 Mch4g1480 686192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1480 396 SUPERFAMILY beta-beta-alpha zinc fingers 58 160 IPR036236 -
Mch4g1480 396 Gene3D Classic Zinc Finger 125 201 - -
Mch4g1480 396 FunFam protein indeterminate-domain 12-like 38 110 - -
Mch4g1480 396 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 139 163 - -
Mch4g1480 396 Coils Coil 310 351 - -
Mch4g1480 396 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Mch4g1480 396 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 359 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch4g1480 396 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Mch4g1480 396 MobiDBLite consensus disorder prediction 1 45 - -
Mch4g1480 396 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 100 134 - -
Mch4g1480 396 Gene3D Classic Zinc Finger 37 105 - -
Mch4g1480 396 SMART c2h2final6 104 134 IPR013087 -
Mch4g1480 396 SMART c2h2final6 140 167 IPR013087 -
Mch4g1480 396 SMART c2h2final6 59 81 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1793 Mch-Chr3:19137507 Mch4g1480 Mch-Chr4:18319755 3.56E-112 dispersed
Mch4g1480 Mch-Chr4:18319755 Mch8g0756 Mch-Chr8:5354386 1.74E-66 dispersed
Mch4g1480 Mch-Chr4:18319755 Mch1g1488 Mch-Chr1:16394687 3.06E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43203 None None None None Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1480 K25871 - csv:101210468 584.334