Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1482 CTTCCTTATAATTTGCAGCAACTTGAGCTCTCTCTTGCCAAAGTTGTAGGTAGTGTGCCTGAGAATCTTTTCTCAAGGTGTCCAAATCTTGTGTTTGTGGATCTTACATTCAATAATCTGACAGGCTCTCTGCCTGAAAATCTCCTGTTGAATGCTGATAAGCTTCAAGATCTCGATCTCTCTTACAACAACCTAACTGGGCCAATCTCAGGGTTGAGAATGGATGAGAATTCTTGCAACTCCCTGTCGCGAGTTGATCTTTCCGGAAACCGAATTGCAGGTTCGATTCCAAATGCCATTTCGAACTGCACGAATCTGCAGACACTTATTTTGTCGTATAATTTTCTGACTGGGGAAATCCCAAGATCTTTAGGGGAGCTCAGCAGTTTGCAGAGAGTGGATCTGTCTCACAATCAGCTTACTGGTTGGCTCCCTTCTGATTGGAGAAATGCTTGCAATTCACTTCAAGAATTAAAACTTTGCTACAACAACATTTCTGGTGTAATCCCACCGTCCTTCTCTGCATGCTCTTGGTTGCAAAGTCTGGATATTTCAAATAACAACATATCAGGTCCTCTACCAGATTCCATCTTCAAGAACCTTGTCTCTTTACAGAGCTTGGTTTTGAGCAATAACATTATCTCTGGACCATTGCCTTCATCCATATCCCACTGCAAGAAACTTCAGCTTATAGATTTGAGTTCCAATAGGATTTCTGGTTTGATCCCACCAGAAATATGCCCAGGTGCTGAGTCACTCCAAGAACTGAAAATGCCAGACAATCTCATAACAGGAGGAATCCCATCTGAACTCTCACTGTGTCCACAGCTAAAGACAATTGATTTTAGTTTGAATTATCTGAATGGATCAATACCTGCAGAGCTTGGAAGGCTTCAGAATCTTGAACAGTTGATAGCATGGTTCAATAGCTTGGAAGGGAAGGTCCCTCCAGAATTGGGGAAGTGCAGGAGCTTGAAGGATCTTATACTTAATAACAATCGTATAAGCGGCGAAATTCCGACGGAATTGTTCAATTGCAGCAATCTTGAATGGGTTTCTCTCACGAGTAATGAACTTACGGGTGAGATCCCAAAGGAGTTTGGTCTTTTGTCAAGGTTGGCTGTTTTGCAACTGGGGAATAATAGCTTAAGTGGTCAGATACCAGCGGAGTTGGCAAACTGCAGCACTTTGGTTTGGTTGGACTTGAACAGCAATAAGCTTACTGGTGAAATCCCTCCTAGACTTGGTAGGCAGCTTGGAGCGAAATCATTGAATGGGATTCTTTTTGGAAACACTCTAGTGTTTGTCCGAAATGTCGGGAATTCGTGCAAAGGAGTTGGTGGTTTGTTAGAATTTGCTGGAATCAGACCTGAAAGACTGCAGCAAGAACCAACATTAAAGACCTGTGATTTCACTAGATTGTACTCCGGTCCAGTCCTCAGTCTGTTTACAAAGTACCAAACTTTGGAGTACTTGGATCTTTCTTACAATCAGCTTCGTGGGAGAATCCCAGAAGAGTTTGGAGATATGGTTGCCTTGCAGGTTCTAGAATTATCTCACAACCAACTCTCCGGCGAGATTCCAGATTCTTTCGGCCGCCTAAAGAACTTAGGTGTGTTTGATGCATCGCATAACAGACTGCAGGGTCATATTCCTGATTCATTCTCAAACTTATCATTCTTAGTCCAAATTGATCTATCTTATAATGAACTAACCGGGCGAATTCCATCGAGGGGACAGCTCAGCACACTCCCTGCAAGTCAGTATGCAAACAATCCAGGACTTTGTGGAGTTCCCTTACCTGAATGCCAGAGTGAAGACCAGCCCACGACAAGTCCTAATGTTGATGCCGGAAAGGGAAGAACAAAGCAAGAAGCTGGGTCCTGGGTTAATAGTATTGTTTTAGGTGTTCTTATTTCCATTGCCTGTGTCTGCATTTTGATTGTTTGGGCCATTGCTATGCGGGCAAGAAGAAAGGAAGCAGAGGAAGTGAAGATGCTTAATAGTTTACAAGCAATACATGCCCCTACTACATGGAAAATTGACAAAGAGAAAGAGCCACTGAGTATCAACGTGGCAACTTTCCAAAGACAACTAAGGAAGCTCAAGTTCTCCCAACTCATTGAAGCTACTAATGGCTTCTCAGCAGAAAGTCTCATTGGGAGTGGCGGGTTTGGTGAAGTGTTTAAAGCAACACTGAAGGATGGATCAAGTGTTGCAATCAAGAAGCTGATACGTCTTAGTTGCCAAGGAGACCGTGAATTCATGGCGGAGATGGAAACTCTGGGAAAGATCAAACATGGAAATTTAGTACCTCTTTTGGGGTATTGTAAAATAGGTGAGGAGAGGCTTCTAGTGTATGAGTTTATGGAGTTTGGTAGCCTAGAAGAGATGCTCCACGGACGGGCAAAGACGCAAGATCAACGAATACTAACGTGGGACGAAAGGAAAAAGATTGCCAGAGGTGCTGCTAAAGGACTCTGTTTCCTGCACCACAACTGCATTCCACACATAATACACAGAGACATGAAGTCAAGCAATGTACTTTTGGACCATGATTTAGAAGCAAGAGTTTCGGATTTCGGAATGGCGAGGCTAATAAGTGCTCTCGACACACATCTGAGCGTAAGCACACTTGCAGGCACACCTGGTTATGTCCCTCCTGAGTACTACCAAAGCTTCAGGTGCACAGCAAAAGGCGACGTCTATTCATTCGGTGTCGTCCTCCTAGAACTCTTGACAGGGAAACGACCAACCGATAAGGAGGATTTTGGGGATACCAACTTGGTGGGTTGGGTCAAAATGAAAGTGAAGGATGGAAAACAAATGGAAGTGATAGACCCAGAGTTGCTTTCAGTAACCAAAGCAAGCGACGAATCAGAAGCTGAAGAAGTCAAAGAAATGGTAAGATATTTGGAGATAACCCTTCAGTGTGTGGAAGAGTTTCCTTCCAAGAGGCCTAATATGTTGCAGGTGGTCGCCATGCTGAGAGAGTTGATGCCTGGATCA 3009 43.74 LPYNLQQLELSLAKVVGSVPENLFSRCPNLVFVDLTFNNLTGSLPENLLLNADKLQDLDLSYNNLTGPISGLRMDENSCNSLSRVDLSGNRIAGSIPNAISNCTNLQTLILSYNFLTGEIPRSLGELSSLQRVDLSHNQLTGWLPSDWRNACNSLQELKLCYNNISGVIPPSFSACSWLQSLDISNNNISGPLPDSIFKNLVSLQSLVLSNNIISGPLPSSISHCKKLQLIDLSSNRISGLIPPEICPGAESLQELKMPDNLITGGIPSELSLCPQLKTIDFSLNYLNGSIPAELGRLQNLEQLIAWFNSLEGKVPPELGKCRSLKDLILNNNRISGEIPTELFNCSNLEWVSLTSNELTGEIPKEFGLLSRLAVLQLGNNSLSGQIPAELANCSTLVWLDLNSNKLTGEIPPRLGRQLGAKSLNGILFGNTLVFVRNVGNSCKGVGGLLEFAGIRPERLQQEPTLKTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNQLRGRIPEEFGDMVALQVLELSHNQLSGEIPDSFGRLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSYNELTGRIPSRGQLSTLPASQYANNPGLCGVPLPECQSEDQPTTSPNVDAGKGRTKQEAGSWVNSIVLGVLISIACVCILIVWAIAMRARRKEAEEVKMLNSLQAIHAPTTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAESLIGSGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHGNLVPLLGYCKIGEERLLVYEFMEFGSLEEMLHGRAKTQDQRILTWDERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHDLEARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVKDGKQMEVIDPELLSVTKASDESEAEEVKEMVRYLEITLQCVEEFPSKRPNMLQVVAMLRELMPGS 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18330583 18333591 - MC04g1025 Mch4g1482 686194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1482 1003 PRINTS Leucine-rich repeat signature 55 68 - -
Mch4g1482 1003 PRINTS Leucine-rich repeat signature 127 140 - -
Mch4g1482 1003 Pfam Leucine Rich Repeat 54 70 IPR001611 GO:0005515(InterPro)
Mch4g1482 1003 Pfam Leucine Rich Repeat 536 558 IPR001611 GO:0005515(InterPro)
Mch4g1482 1003 Pfam Leucine Rich Repeat 154 176 IPR001611 GO:0005515(InterPro)
Mch4g1482 1003 Pfam Leucine Rich Repeat 324 346 IPR001611 GO:0005515(InterPro)
Mch4g1482 1003 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 481 603 - -
Mch4g1482 1003 SUPERFAMILY L domain-like 471 599 - -
Mch4g1482 1003 Pfam Protein kinase domain 716 993 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1482 1003 FunFam serine/threonine-protein kinase BRI1-like 2 790 1003 - -
Mch4g1482 1003 SUPERFAMILY RNI-like 85 413 - -
Mch4g1482 1003 Gene3D - 428 484 - -
Mch4g1482 1003 SUPERFAMILY L domain-like 3 70 - -
Mch4g1482 1003 Gene3D Ribonuclease Inhibitor 4 603 IPR032675 -
Mch4g1482 1003 SMART serkin_6 714 1000 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1482 1003 MobiDBLite consensus disorder prediction 601 621 - -
Mch4g1482 1003 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 202 433 - -
Mch4g1482 1003 SUPERFAMILY Protein kinase-like (PK-like) 695 996 IPR011009 -
Mch4g1482 1003 SMART LRR_typ_2 510 534 IPR003591 -
Mch4g1482 1003 SMART LRR_typ_2 127 150 IPR003591 -
Mch4g1482 1003 SMART LRR_typ_2 179 200 IPR003591 -
Mch4g1482 1003 SMART LRR_typ_2 298 322 IPR003591 -
Mch4g1482 1003 SMART LRR_typ_2 370 394 IPR003591 -
Mch4g1482 1003 SMART LRR_typ_2 201 225 IPR003591 -
Mch4g1482 1003 SMART LRR_typ_2 323 346 IPR003591 -
Mch4g1482 1003 Gene3D Phosphorylase Kinase; domain 1 675 789 - -
Mch4g1482 1003 CDD STKc_IRAK 720 999 - -
Mch4g1482 1003 ProSitePatterns Protein kinases ATP-binding region signature. 720 743 IPR017441 GO:0005524(InterPro)
Mch4g1482 1003 Pfam Leucine rich repeat 347 407 IPR001611 GO:0005515(InterPro)
Mch4g1482 1003 Pfam Leucine rich repeat 179 238 IPR001611 GO:0005515(InterPro)
Mch4g1482 1003 Pfam Leucine rich repeat 81 140 IPR001611 GO:0005515(InterPro)
Mch4g1482 1003 Pfam Leucine rich repeat 482 523 IPR001611 GO:0005515(InterPro)
Mch4g1482 1003 Pfam Brassinosteroid receptor island domain 425 483 IPR045381 -
Mch4g1482 1003 FunFam serine/threonine-protein kinase BRI1-like 2 675 789 - -
Mch4g1482 1003 Gene3D Transferase(Phosphotransferase) domain 1 790 1002 - -
Mch4g1482 1003 ProSiteProfiles Protein kinase domain profile. 714 1000 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1482 1003 PANTHER LEUCINE RICH REPEAT KINASE 2 179 998 IPR051420 -
Mch4g1482 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 838 850 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g1482 1003 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 2 201 - -
Mch4g1482 1003 MobiDBLite consensus disorder prediction 604 618 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0170 Mch-Chr10:1013841 Mch4g1482 Mch-Chr4:18330583 7.14E-97 dispersed
Mch1g1066 Mch-Chr1:13609815 Mch4g1482 Mch-Chr4:18330583 5.81E-166 dispersed
Mch4g1482 Mch-Chr4:18330583 Mch7g0889 Mch-Chr7:13444948 2.16E-66 dispersed
Mch4g1482 Mch-Chr4:18330583 Mch9g0491 Mch-Chr9:3621434 3.67E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77338 PF00069 Pkinase 5.50E-44 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1482 - - - 0.0