Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1496 ATGGTGCTCTCTAAAACTTTTTCTGAATCGGATGTGTCTATACATTCAACATTTGCCTCTCGCTATGTCCGCGACTCTGCCCCGAGGTTCAGCATGCCTGAAAACTCCATGCCCAAGGAGGCCGCCTTCCAGATCATCAACGATGAGCTCATGCTCGACGGCAATCCCAGGCTGAATCTGGCTTCCTTCGTCACCACTTGGATGGAGCCCGAGTGCGACAAGCTCATCATGGACTCTGTCAACAAGAACTACGTGGACATGGACGAGTACCCCGTCACCACCGAGCTCCAGAACCGTTGCGTCAACATGATCGCCCATCTCTTCAACGCCCCCCTCGGAGACTCCGACGCCGCCGTGGGAGTGGGCACTGTGGGGTCATCGGAGGCCATCATGCTGGCGGGGCTGGCCTTCAAGAGGAAGTGGCAGAACAAGCGCAGGGCCCAGGGGAAGCCCATCGACAGGCCCAACATCGTCACTGGCTCCAACGTCCAAGTCTGCTGGGAGAAGTTCGCGAGGTACTTCGAGGTGGAGCTCAAGGAAGTTAATGTGAGTGAAGGGTACTACGTCATGGACCCTCTCAAGGCCGTAGACATGGTCGACGAGAACACCATCTGCGTTGCCGCCATCTTGGGCTCCACTTACAATGGGGAATTCGAGGATGTGAAGCTGCTCAACGATCTGCTGGTGGAGAAGAACAAGGAAACTGGGTGGGACACTCCCATCCACGTGGACGCGGCCAGCGGTGGGTTCATAGCGCCGTTCCTGTACCCAGAGCTGGAATGGGACTTCAGGCTTCCTCTGGTGAAGAGCATCAACGTAAGTGGCCACAAGTACGGGCTTGTCTACGCCGGAATTGGTTGGGTCATTTGGAGGACCAAGGAGGATCTGCCGGAAGAGCTCATTTTCCACATCAATTACCTTGGAGCCGATCAGCCCACATTCACCCTCAATTTCTCCAAGGGGTCTAGCCAGATCATTGCCCAATACTACCAACTAATCCGTCTGGGGTTCGAGGGGTACAGAAATGTGATGCAGAATTGTCACGACAATGCAATGGTTCTGAAGGAAGGACTTGAGAACACAGGGCGGTTCAGTATTGCGTCAAAGGACGTGGGAGTTCCGGTGGTGGCGTTCTCTCTGAAAGACCGAAGCCGCCACGATGAGTTTGAGGTGTCGGAGATGCTGCGTCGCTTCGGGTGGATCGTGCCAGCGTACCCAATGCCGGAGGGTGCCAAGCACGTGTCAGTTCTTCGTGTTGTGATTAGAGAAGACTTCTCTCGGACCCTTGCGGAGCGGCTTGTGCTTGATATCGTTAAGGTTCTGGCAGAGCTTGATACTCTTCCACCGAAGAATAGTGTGAAAATTACGAGCTTGGAAAATGGTGAGCCGATGATGAAGAAGACGACAGAGGAGGCAGAGAGGGAAATTGCGACATATTGGAAGAATATAACTAAGGCCAGGAAAATCAAGCTTGCTGCTAATCAAGCTGGTCCTTCCGTTACCGTCATTGCCAAA 1515 53.93 MVLSKTFSESDVSIHSTFASRYVRDSAPRFSMPENSMPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDAAVGVGTVGSSEAIMLAGLAFKRKWQNKRRAQGKPIDRPNIVTGSNVQVCWEKFARYFEVELKEVNVSEGYYVMDPLKAVDMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYRNVMQNCHDNAMVLKEGLENTGRFSIASKDVGVPVVAFSLKDRSRHDEFEVSEMLRRFGWIVPAYPMPEGAKHVSVLRVVIREDFSRTLAERLVLDIVKVLAELDTLPPKNSVKITSLENGEPMMKKTTEEAEREIATYWKNITKARKIKLAANQAGPSVTVIAK 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18454034 18455645 + MC04g1037 Mch4g1496 686208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1496 505 PANTHER GLUTAMATE DECARBOXYLASE 1 488 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Mch4g1496 505 CDD DOPA_deC_like 59 439 - -
Mch4g1496 505 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Mch4g1496 505 Gene3D - 361 448 - -
Mch4g1496 505 FunFam Glutamate decarboxylase 1 65 - -
Mch4g1496 505 FunFam Glutamate decarboxylase 361 448 - -
Mch4g1496 505 FunFam Glutamate decarboxylase 66 360 - -
Mch4g1496 505 Gene3D - 66 360 IPR015421 -
Mch4g1496 505 NCBIfam glutamate decarboxylase 16 444 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Mch4g1496 505 Gene3D - 1 65 - -
Mch4g1496 505 SUPERFAMILY PLP-dependent transferases 16 444 IPR015424 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1493 Mch-Chr4:18424896 Mch4g1496 Mch-Chr4:18454034 0 dispersed
Mch4g1496 Mch-Chr4:18454034 Mch4g1666 Mch-Chr4:19855907 1.59E-298 dispersed
Mch4g1494 Mch-Chr4:18433438 Mch4g1496 Mch-Chr4:18454034 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1496 K01580 - csv:101208026 953.74