Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g1534 | ATGAATGGGAAGGATGAATTTGAAGTTGAGAGTAGGACCAGTGATCCTATGAGTATCTCCTCCGGCTGGCAATTTTCTGCTGCTAATCTCACTAATGACTCTGTGGGATATGTTTCGACCGGGAATCACTCGGTCGTTAGCAATGGGGATCTAGGTGTTTCTTCTTGTCCTTCAACTTCAATGCCTAACTTATTCACTCCAACCCTTTTGAACCATCATACCAACATGCAAAACTCGGGATTCTGCAGCATTTTTAATGAACAAAACAGCATAGTTACTTCTAATACAACTGCAGTTGATGGAGAGAGTCTGAATTCTTTGAGATCTGGTAGTGATAGAATGCTGGGTATGGATTGGAACCAGCAAAATCCATGGATGAAAGGAGTTTTCTCGGCAAACGTTCCTGGAACGTTTCCAGCGAGTTTGTCTCAACTTCCAGCTGATTCGGCATTCGTAGAGCGTGCAGCAAGGTTCTCCTGCTTCAATAATGGAGTTTTTGTGGCACCGCCCACCGGTCCATTTGGTATTTCTGACTCTATTAGCATTCATTCTAGGGGTGAATTTGGAAGACAAGAAGATATTTCCAGAAATGGAGCCGCCAAAGATGTTTCTTTGCCCATGAAGTTTGAGGAGGCTAAAGAAAAGAATCCACCTAAGACTGAGAAAGAAAGTGAGAGGTCTCAAGATAGGGCAAAACAGGGTTGTGTTGGTGAATCTGGTAACGAATCTGATGAAGCTGGATTTAGTGGGGGTCAAGACGAGCGATGCACGCTGGAGGGTACTATCACTGAGCCATCTACTGAAGGTCTCTGCTCCAAGAAAAGGAAAAGGGGTGGGCAGAATATGGGACCTGGACAAGCTAAAGACGCTCCACAGCAAATTGACGAAATTGCGAAGAACAGAGGATTAAATCAGCCAAAGGGAGACCAAAAGCCTGCAGGGAAGCAAGGAAAACAAGACTCTCAAGCATCGGATGCTCCCAAAGAAGAATATATTCATGTTAGAGCTCGAAGAGGCCAGGCGACAAACAGTCATAGTCTTGCAGAAAGGGTAAGAAGAGAAAAAATAAGTGAAAGAATGAGGCTCCTTCAAGACCTTGTGCCTGGGTGCAGTAAGGTCACTGGCAAAGCTGTAATGCTTGATGAAATCATTAACTATGTACAGTCACTGCAACGCCAAGTCGAGTTCTTGTCAATGAAACTTGCAACAGTTAATCCCAGGCTCGATTTTAACATCGAAGAGCTCCTTGCAAAAGAGATCATTCAATCCAAGGCTGGTCCATCCTTATTTGGTTTTCCTCCTGATCTGCCTATGCCTTACCTCCTGCAACATCCATCTCACCAAGGACTTGTTCTGCCCTCTCTTCCTAATATCGGGAACTCCTCCGACCTGCTGCGGAGAACAATTAATTCCCAGCTTACTTCATTTGTTGGTGGATTCAAGGAGCCAGTTCAGCTACCAAACGTGTGGGAGGATGAGCTCCACAATGCCGTTCCGATGAACTTCGATGGGACTGCACCCTCCAATGGCCAAGATGTCGATGGTTCGACTTCACAATGCAACACAAGGGCAGAACTC | 1578 | 45.44 | MNGKDEFEVESRTSDPMSISSGWQFSAANLTNDSVGYVSTGNHSVVSNGDLGVSSCPSTSMPNLFTPTLLNHHTNMQNSGFCSIFNEQNSIVTSNTTAVDGESLNSLRSGSDRMLGMDWNQQNPWMKGVFSANVPGTFPASLSQLPADSAFVERAARFSCFNNGVFVAPPTGPFGISDSISIHSRGEFGRQEDISRNGAAKDVSLPMKFEEAKEKNPPKTEKESERSQDRAKQGCVGESGNESDEAGFSGGQDERCTLEGTITEPSTEGLCSKKRKRGGQNMGPGQAKDAPQQIDEIAKNRGLNQPKGDQKPAGKQGKQDSQASDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLAKEIIQSKAGPSLFGFPPDLPMPYLLQHPSHQGLVLPSLPNIGNSSDLLRRTINSQLTSFVGGFKEPVQLPNVWEDELHNAVPMNFDGTAPSNGQDVDGSTSQCNTRAEL | 526 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 18722502 | 18725871 | - | MC04g1066 | Mch4g1534 | 686246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g1534 | 526 | MobiDBLite | consensus disorder prediction | 206 | 232 | - | - | |
| Mch4g1534 | 526 | FunFam | Basic helix-loop-helix transcription factor | 337 | 409 | - | - | |
| Mch4g1534 | 526 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 338 | 409 | IPR036638 | GO:0046983(InterPro) | |
| Mch4g1534 | 526 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 340 | 390 | IPR011598 | GO:0046983(InterPro) | |
| Mch4g1534 | 526 | Gene3D | - | 337 | 411 | IPR036638 | GO:0046983(InterPro) | |
| Mch4g1534 | 526 | SMART | finulus | 346 | 396 | IPR011598 | GO:0046983(InterPro) | |
| Mch4g1534 | 526 | Pfam | Helix-loop-helix DNA-binding domain | 343 | 391 | IPR011598 | GO:0046983(InterPro) | |
| Mch4g1534 | 526 | CDD | bHLH_AtBPE_like | 330 | 415 | - | - | |
| Mch4g1534 | 526 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 142 | 442 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
| Mch4g1534 | 526 | MobiDBLite | consensus disorder prediction | 188 | 327 | - | - | |
| Mch4g1534 | 526 | MobiDBLite | consensus disorder prediction | 502 | 526 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch11g0386 | Mch-Chr11:2416136 | Mch4g1534 | Mch-Chr4:18722502 | 2.18E-47 | dispersed | |
| Mch4g0582 | Mch-Chr4:3731823 | Mch4g1534 | Mch-Chr4:18722502 | 6.07E-49 | dispersed | |
| Mch4g1534 | Mch-Chr4:18722502 | Mch8g1988 | Mch-Chr8:22052118 | 4.03E-36 | dispersed | |
| Mch5g0843 | Mch-Chr5:5925941 | Mch4g1534 | Mch-Chr4:18722502 | 8.60E-52 | transposed | |
| Mch9g1063 | Mch-Chr9:9814014 | Mch4g1534 | Mch-Chr4:18722502 | 1.17E-42 | transposed | |
| Mch4g1534 | Mch-Chr4:18722502 | Mch9g2038 | Mch-Chr9:21596402 | 2.63E-125 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43204 | PF00010 | HLH | 6.40E-06 | No_clan | Mch | TF |
Pathway information