Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1546 ATGGAAATTAGGAGAGAGAATGGGTTTTTGTTCTGTTTGGCTTTGCTTTCGTTATGGGTTCCTGCAAGTGCTTCTTCAACACCCAAAGGTTCAAACCCTGAAGTTCATGCTTTGATGGGGATCAAAGCTGCTTTGAAGGATCCTCATTCTGTTCTGGCTTGGGATGATGATGCTGTGGATCCATGCACTTGGAATTTAATCACTTGCTCTTCTGGTGCAGAACCCAAAGTCATTGGCATAGGAGCTCCAAGCCAAAACTTATCTGGTACACTCTCACCAAGTATTGGAAATTTGACAAACCTCCTATTTTTGCTTCTTCAGAATAACAATATATCAGGAAAAATTCCCAATGAGATTAGCAAGATACCTAAACTACGCACACTTGATCTTTCAAACAACTTGTTCTCTGGTGAAATTCCCAGCTCATTCTCCAACTTGAAAAGCCTCCAATATCTGAGACTCAACAATAACACCTTCTCTGGGCCGATCCCATCATCATTGGCTAACATGACTCAGCTTGCCTTGCTGGACCTATCCTACAATGATTTGAGTGGTCCTGTGCCCAGACTGCTGGCTAAGACATTTAACTTCACTGGAAACTCTTTGATTTGTGCCCCTGGAACTAATGAAGCATGCTATGGAACATCTCCATTGCCACTTTCTTTCGCTGTTACAAACGCTTCATACTCGCAACCTCCTAAGAGACACAGAGGCCAGAGAATTGCCTTAGTCATTGGTCTTAGCTTGGGCTGCATCGGTCTCTTAACCCTTGGATATGGTTTCTTTTTCTGGCGGAAGCATAGGCACAACCAGCAAATATTCTTTGAAGCTAATGATCGGCATCTTGAAGAACTGAGCCTTGGAAACATAAAGAGGTTTCAGTTCAGAGAACTTCAGAATGCCACTCACAATTTCAGCAGTAAAAACTTGATTGGAAAAGGTGGCTTTGGGAATGTATACAAAGGATATCTCCAAGATGGCACCATTATAGCTGTCAAGAGGCTCAAAGATGGGAATGCCATGAGAGGAGAGATCCAGTTTCAGACTGAAGTTGAGATGATAAGCTTGGCAGTGCATAGGAACCTCCTCAGGTTGTATGGTTTCTGTATTACAACAACAGAGAGGCTTTTGGTCTATCCATATATGTCCAATGGCAGTGTTGCCACCCGTCTTAAAGCAAAACCAGCTCTGGATTGGAGTACAAGGAAGAGAATTGCCTTGGGAGCTGCTCGGGGCTTGTTATACTTACATGAACAGTGTGATCCAAAAATCATTCACAGGGATGTGAAGGCTGCAAATATATTGCTTGATGATTTCTGTGAGGCAGTGGTGGGGGATTTTGGGCTGGCAAAGCTGTTAGATCACAGAGATTCACATGTCACAACTGCTGTGAGGGGAACTGTTGGGCACATTGCACCAGAGTATCTATCAACTGGCCAATCCTCAGAGAAAACAGATGTTTTCGGGTTCGGAATTCTACTCCTTGAGCTCATATCGGGTCAAAGAGCTCTTGAATTTGGAAAAGTGGCAAACCAAAAAGGAGCAATTCTGGACTGGGTAAAGAAGATTCACCAAGAAAAGAAGCTTGAAATGCTTGTTGACAAAGACTTGAAAAGCAATTACGACCGAATAGAACTTGAGGAAATGGTTCAAGTAGCTCTCTTGTGCACCCAATGTCATCCCAGCCACAGGCCTAAAATGTCTGAAGTGGTCAGGATGCTTGAAGGAGATGGGCTGGCAGAGAAATGGGAAGCTTCCCAAAGATCAGATGCAAACAGGGGCAGAGCCAATGAGTTCTCCACTTCAGAACGTTACTCTGATCTTACTGACGACTCTTCATTGTTTGCTCAAGCAATAGATCTCTCAGGACCCAGATAG 1878 43.77 MEIRRENGFLFCLALLSLWVPASASSTPKGSNPEVHALMGIKAALKDPHSVLAWDDDAVDPCTWNLITCSSGAEPKVIGIGAPSQNLSGTLSPSIGNLTNLLFLLLQNNNISGKIPNEISKIPKLRTLDLSNNLFSGEIPSSFSNLKSLQYLRLNNNTFSGPIPSSLANMTQLALLDLSYNDLSGPVPRLLAKTFNFTGNSLICAPGTNEACYGTSPLPLSFAVTNASYSQPPKRHRGQRIALVIGLSLGCIGLLTLGYGFFFWRKHRHNQQIFFEANDRHLEELSLGNIKRFQFRELQNATHNFSSKNLIGKGGFGNVYKGYLQDGTIIAVKRLKDGNAMRGEIQFQTEVEMISLAVHRNLLRLYGFCITTTERLLVYPYMSNGSVATRLKAKPALDWSTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDFCEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKVANQKGAILDWVKKIHQEKKLEMLVDKDLKSNYDRIELEEMVQVALLCTQCHPSHRPKMSEVVRMLEGDGLAEKWEASQRSDANRGRANEFSTSERYSDLTDDSSLFAQAIDLSGPR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 18782427 18788352 - MC04g1075 Mch4g1546 686258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1546 625 SUPERFAMILY L domain-like 33 205 - -
Mch4g1546 625 MobiDBLite consensus disorder prediction 592 606 - -
Mch4g1546 625 Pfam Protein tyrosine and serine/threonine kinase 308 574 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g1546 625 Pfam Leucine rich repeat 140 183 IPR001611 GO:0005515(InterPro)
Mch4g1546 625 ProSiteProfiles Protein kinase domain profile. 305 584 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1546 625 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524(InterPro)
Mch4g1546 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 625 - -
Mch4g1546 625 SUPERFAMILY Protein kinase-like (PK-like) 284 575 IPR011009 -
Mch4g1546 625 Gene3D Phosphorylase Kinase; domain 1 274 381 - -
Mch4g1546 625 FunFam Somatic embryogenesis receptor-like kinase 1 382 594 - -
Mch4g1546 625 FunFam Somatic embryogenesis receptor kinase 1 274 381 - -
Mch4g1546 625 MobiDBLite consensus disorder prediction 584 606 - -
Mch4g1546 625 Gene3D Transferase(Phosphotransferase) domain 1 382 594 - -
Mch4g1546 625 Pfam Leucine Rich Repeat 100 121 IPR001611 GO:0005515(InterPro)
Mch4g1546 625 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Mch4g1546 625 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 31 194 - -
Mch4g1546 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g1546 625 SMART serkin_6 305 574 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1546 625 Gene3D Ribonuclease Inhibitor 31 214 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1546 Mch-Chr4:18782427 Mch4g2400 Mch-Chr4:25103365 1.88E-265 dispersed
Mch2g1499 Mch-Chr2:11400069 Mch4g1546 Mch-Chr4:18782427 2.24E-124 transposed
Mch4g1546 Mch-Chr4:18782427 Mch9g2027 Mch-Chr9:21513695 5.56E-210 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77339 PF00069 Pkinase 3.00E-44 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1546 - - - 0.0