Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1577 ATGGGCAAGAAGAAGGGGTGGTTTTATTTAGTCAAGAGGCTATTTGTTTCAGAGGAACAGCCAAAGCCTGAGAAGAAGCAGAAGAGATGGAAATGGGTGTTTGGAAGGCTAAAGAACAAGAGATTAGTCACACTGACAGCGCCATCGCCACCGAAAGTGGCGATGAGCCGAGAGGAAGCAGAGGAGGAAGAGGAGAGGAAGCAGGCTCTTTCAGTGGCCATTGCGAGTACTGCAGCGGCCGAAGCGGCGGTTGCAGCCGCCAAGGCTGCTGTTGAGGTTGTTTGGCTCACAGGGACCCCTCAATCTCAGCATCAAGAGGCTGCACAAGAAGCCTTTAAACCTCTCAAGAAGGCCCCTCCATATGATCTCCATAAACGTGAAAGGGAAATCCATGAATTTGCTGCTATTACTATCCAAACTGCTTTCCGTGGCTTCCTTGCAAGGAAAGCATTGCGAGCACTGAAAGGAATAGTGAGGCTTCAGGCAATTATCAGAGGGAGAGCTGTTAGGCGCCAAGCCATTGCCACCTTGAAGTGCTTGCAGTCCATCGTTAGCATACAATCTCAAGTCTGTTCAAATCGACTCCATCCTTCTCAAAACACATTCCATTCTCCTGAAACCAGACAGTTGCAGAGCTTGAAAGATAGGATTTTAAAGTTGGATTCGGACGGTCAAAGGTGGGATGATAGCCTATTATCAAAAGAAGAGGCGGATGCCGTGTTCTTGAGTAGGAAAGAAGCAGTGATCAGGCGAGAGCGAGTCAAGGAATACTTGTTCGCCCACAGGAGATCTGCAGAATCAGAACGAAAGAAGGTAAGAGGAAGATGGAGATACTGGCTAGACCAATGGGTCGATACCCAACTCTCCAAAAGCAAAGAACTCGAAGATTTGGACTCCATTTTCACCTCAAACCCAAAACACAAAGAAACAGACGGATTCAGCGCAAACCCAACAAAAAACACGGATCATCGAGCCACAGAACTCCCCAACCAATCTCCATCCCCAAAACCAGTTCTGAGAAAACTCTCTCACCACAAGAAGCAGCATTCACTGGGGGGCGGCGTGGACTTAAACAACTCATTTTCAAGCTCCCCGCTCGCGCCCACTTACATGGCCGCCACAGAATCTGCAAAGGCAAAGGCCAGGTCCCTGAGCTCGCCGAAGCTAAGGCCGGCGGGGGGTTTGGACACGTGCTCCGATGGAAACTCGCCGTGCAAGACGAAGCAGCTGTGTTTGGTGTCTTCAACGGCGAGTGAAGTGGCGATTGGCGGCGGCAGAAGGGGGTTCCAGTTCCAGCAGCAGCAGCGGTCGCCGGGTCTAAAAGGGCTTCCGGGGCCTACGAGATCGAGCAGAACTCTCAAGGATTTGAGCATTGATTCGGAGCATTCATTGCCAAATTGGGATGGACGAAGTTCCTTCCAATGA 1425 50.6 MGKKKGWFYLVKRLFVSEEQPKPEKKQKRWKWVFGRLKNKRLVTLTAPSPPKVAMSREEAEEEEERKQALSVAIASTAAAEAAVAAAKAAVEVVWLTGTPQSQHQEAAQEAFKPLKKAPPYDLHKREREIHEFAAITIQTAFRGFLARKALRALKGIVRLQAIIRGRAVRRQAIATLKCLQSIVSIQSQVCSNRLHPSQNTFHSPETRQLQSLKDRILKLDSDGQRWDDSLLSKEEADAVFLSRKEAVIRRERVKEYLFAHRRSAESERKKVRGRWRYWLDQWVDTQLSKSKELEDLDSIFTSNPKHKETDGFSANPTKNTDHRATELPNQSPSPKPVLRKLSHHKKQHSLGGGVDLNNSFSSSPLAPTYMAATESAKAKARSLSSPKLRPAGGLDTCSDGNSPCKTKQLCLVSSTASEVAIGGGRRGFQFQQQQRSPGLKGLPGPTRSSRTLKDLSIDSEHSLPNWDGRSSFQ 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19064676 19068568 + MC04g1096 Mch4g1577 686289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1577 474 ProSiteProfiles IQ motif profile. 155 182 - -
Mch4g1577 474 ProSiteProfiles IQ motif profile. 131 159 - -
Mch4g1577 474 Pfam Protein of unknown function (DUF4005) 357 434 IPR025064 -
Mch4g1577 474 MobiDBLite consensus disorder prediction 381 400 - -
Mch4g1577 474 MobiDBLite consensus disorder prediction 302 357 - -
Mch4g1577 474 Gene3D - 131 181 - -
Mch4g1577 474 Coils Coil 53 73 - -
Mch4g1577 474 Pfam IQ calmodulin-binding motif 134 152 IPR000048 GO:0005515(InterPro)
Mch4g1577 474 MobiDBLite consensus disorder prediction 306 337 - -
Mch4g1577 474 PANTHER IQ-DOMAIN 5-RELATED 11 406 - -
Mch4g1577 474 MobiDBLite consensus disorder prediction 428 474 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1577 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1577 Mch-Chr4:19064676 Mch7g0083 Mch-Chr7:896691 1.05E-21 dispersed
Mch4g1577 Mch-Chr4:19064676 Mch4g2077 Mch-Chr4:22941834 2.60E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1765 . 111 276 IQD Protein Family AT3G09710 54.1 6.8e-42 168.7
Mch4g2077 . 1 475 IQD Protein Family AT3G52290 54.6 4.4e-104 375.2
Mch6g1311 . 3 411 IQD Protein Family AT3G22190 56.9 8.2e-95 344.4
Mch11g0421 . 72 508 IQD Protein Family AT2G26180 59.5 3.7e-116 415.2
Mch10g1067 . 40 215 IQD Protein Family AT2G33990 55.3 7.2e-49 191.0
Mch10g1067 . 17 216 IQD Protein Family AT3G15050 56.2 1.2e-56 216.9
Mch4g1577 . 128 475 IQD Protein Family AT5G13460 50.7 5.4e-73 271.9
Mch7g0083 . 106 486 IQD Protein Family AT2G43680 53.4 1.2e-87 321.2
Mch5g0018 . 1 508 IQD Protein Family AT4G00820 55.1 2.0e-122 436.4
Mch5g0018 . 1 508 IQD Protein Family AT1G01110 53.4 1.4e-120 430.3
Mch9g0298 . 1 397 IQD Protein Family AT3G16490 52.8 3.3e-74 275.8
Mch6g0862 . 1 394 IQD Protein Family AT3G16490 51.2 7.1e-69 258.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007465 1 2 1 1 0 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 35