Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1592 ATGTCGACCCAGCAGCAGAATTCGGATTCAAACGCCGTTTCAGGCGCTTGTCTCTTTGATCTCCTGTTTCCAGATTCAGAAATGCAAGGCTGGGACTGGAGTCGAATGCCCTCTGATTCAGAAGTGCAAGGCTGGAATTGGAAAAAGGATCAACAACTCTCGGGCCCCCAGAAAAGGTTGGAGGATCTGTTGCACCAGCCTGGTAATAGATTGTGTGCAGATTGTGGATCACCGGATCCAAAATGGGTATCGTTAAATTTGGGAGTGTTTATCTGTATAAAGTGTTCTGGAGTACACAGAAGTCTTGGAGTTCATATCTCTAAGGTTTTCTCAGTGAAACTAGATAATTGGACGGATGAACAAGTCAATGCTTTGGCTAGCTTGGGTGGAAACACTGATATAAACAAGAAGTATGAAGCTTCAATCTTTGAGGGCTACAAAAAACCGAGACCAGATGCCTGCATAGAGGAGCGCTTCGATTTTATTAGGAGAAAGTATGAACTGCTGCAATTTTATAACGCCAGTAGTCATAATTCTAGTGATCACCAGTCAATTAATAAAAGTTCATCATGCTCTCAAAACAACTCTCAAAACAACTCTTCAAGCAAGAATGGTACCCATACCCATGATAAAAGGCACCATGAGAATGATAAAAGGCACTTTGAGAAACAAGCTACCAGGCATCGCATCGGGCATGGATTTCGTAACAGTTGGGGAAGAAAAGACAGTGACCATAAGAGTTCCGAGAAGAGAAACCATTTAGTCTCGAGACAACCATCGGCAGGTATGGTTGAATTTGTTGGGTTGATTAAGGTCAATGTGGTTAAAGGCACGAACCTAGCTGTTCGAGATGTGGTGACCAGCGATCCCTACGTAATTCTCATCTTAGGGCACCAATCGGTGAGGACTCGCGTCATAAAGAACAACCTTAACCCAGTTTGGAACGAGAGCCTAATGTTGTCCATTCCTGAGCATATCCCTCCGCTAAAAGTGCTTGTATATGACAAGGACACATTTTCGACTGATGACTTCATGGGTGAGGCCGAGATCGACATTCAGCCGTTGGTTGCTGCCACGAAGGCCTACGAGAAGTCCTCAATTGATGAATCAATGCAGCTGGGAAAATGGGTGGCAAGTAACGAAAATACCTTGGTAAAAGATGGAATCATCAACCTTGTAGATGGAAAGGTCAGACAGGATATATCTCTTAGATTGCAGAATGTGGAGAGAGGTGTTCTTGAGATTGAACTAGAATGCATTCCTCTCACACAATAG 1275 43.76 MSTQQQNSDSNAVSGACLFDLLFPDSEMQGWDWSRMPSDSEVQGWNWKKDQQLSGPQKRLEDLLHQPGNRLCADCGSPDPKWVSLNLGVFICIKCSGVHRSLGVHISKVFSVKLDNWTDEQVNALASLGGNTDINKKYEASIFEGYKKPRPDACIEERFDFIRRKYELLQFYNASSHNSSDHQSINKSSSCSQNNSQNNSSSKNGTHTHDKRHHENDKRHFEKQATRHRIGHGFRNSWGRKDSDHKSSEKRNHLVSRQPSAGMVEFVGLIKVNVVKGTNLAVRDVVTSDPYVILILGHQSVRTRVIKNNLNPVWNESLMLSIPEHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVAATKAYEKSSIDESMQLGKWVASNENTLVKDGIINLVDGKVRQDISLRLQNVERGVLEIELECIPLTQ 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19168577 19180528 + MC04g1111 Mch4g1592 686304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1592 424 Gene3D C2 domain 267 422 IPR035892 -
Mch4g1592 424 Gene3D Arf GTPase activating protein 39 180 IPR038508 -
Mch4g1592 424 MobiDBLite consensus disorder prediction 177 204 - -
Mch4g1592 424 Pfam Putative GTPase activating protein for Arf 58 173 IPR001164 GO:0005096(InterPro)
Mch4g1592 424 SMART arf_gap_3 57 180 IPR001164 GO:0005096(InterPro)
Mch4g1592 424 MobiDBLite consensus disorder prediction 205 253 - -
Mch4g1592 424 Pfam C2 domain 269 357 IPR000008 -
Mch4g1592 424 PRINTS HIV Rev interacting protein signature 109 130 IPR001164 GO:0005096(InterPro)
Mch4g1592 424 PRINTS HIV Rev interacting protein signature 69 88 IPR001164 GO:0005096(InterPro)
Mch4g1592 424 PRINTS HIV Rev interacting protein signature 88 105 IPR001164 GO:0005096(InterPro)
Mch4g1592 424 SUPERFAMILY ArfGap/RecO-like zinc finger 57 172 IPR037278 -
Mch4g1592 424 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 48 424 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
Mch4g1592 424 CDD C2_ArfGAP 267 411 - -
Mch4g1592 424 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 265 359 IPR035892 -
Mch4g1592 424 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 266 424 - -
Mch4g1592 424 ProSiteProfiles ARF GTPase-activating proteins domain profile. 57 179 IPR001164 GO:0005096(InterPro)
Mch4g1592 424 FunFam stromal membrane-associated protein 1 isoform X1 43 177 - -
Mch4g1592 424 CDD ArfGap 60 166 - -
Mch4g1592 424 ProSiteProfiles C2 domain profile. 251 366 IPR000008 -
Mch4g1592 424 SMART C2_3c 269 364 IPR000008 -
Mch4g1592 424 MobiDBLite consensus disorder prediction 177 256 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0937 Mch-Chr3:13250318 Mch4g1592 Mch-Chr4:19168577 1.33E-108 dispersed
Mch3g1559 Mch-Chr3:17623628 Mch4g1592 Mch-Chr4:19168577 6.76E-19 dispersed
Mch4g1592 Mch-Chr4:19168577 Mch9g1741 Mch-Chr9:19382350 5.76E-165 dispersed
Mch4g1592 Mch-Chr4:19168577 Mch1g2092 Mch-Chr1:20297906 3.48E-115 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1592 K12486 - csv:101215531 701.434