Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1606 TTCTTTTTCTTTTCTCTCTCGTTTGCTTTCTCCGGCGCCGTCGCCTCCGTTCCTGCCGATGCAATGTCGCTCCTCAGGTTTAAGGATTCTGTTTGTTTTGACTCCTCCGCTGTTCTTCGTGGCTGGAATTTGTCCGTTTCTTACTGCGATTGGTTTGGAGTTACCTGTGACCGTGTTACTGGTAGAGTTGTTGAACTGAAGATGAATGGAAGTGATTCCGTTCTCGCCGGGACGCTGAATCCGGCGATTGGAGATCTTGCTGAACTTCGAGTTTTGTCGCTTCCGGATAATCTGATCTGCGGGGAGATTCCGGGGAGCATTGGGAAGCTTCAGTCGTTGGAGGTTCTTGAGCTTCAGGGGAACAATTTCTCTGGAAAGATTCCGAGACAGATAAGTTATCTTCGATCTCTCCGCCTGCTTAATTTGTCTGATAACTCGTTTTCGGGCTCGATACCGAGTAAATTGATCGGTTCGATGAAATTAGAACGGATTGATTTGTCGTATAATCAACTGTCTGGTAGAATTCAAGTTGTCGATAATAGATGTGGCGTTTTGAATCATTTGAGGCTTTCGCATAACTTTCTGACTGACAACATTCCGGCGGAGATTGGGCAATGTTGGAATCTGAGGAGTTTGTTGCTTGATGGTAATATATTAGAGGGTCGGATTCCGGCTGAGATCGGCAGAATTTCAGAACTCAGAGTTCTTGATGTTTCTAGAAATAGCCTTACCGATACGATACCTAAAGAGCTCGGCAATTGCCGGAAATTATCACAGATCGTGTTGACGAACTTGAACGATATCATTCCCGACGACGATAGTTTAAGAGGGGAATTCAACGCTTTCAATGGCGGTATCCCTTCTGAGTTGCTATTGCTTCCAAGTCTGCGAGTTTTTTGGGCACCGAGAGCGAATTTTAATGGCGAATTGCCGAGTAATTGGAGTTCTTCATGCTCGCTCAGAATTCTCAATTTAGGGCAAAATTACATCACCGGTACCATACCCGAAGCGATTGGGATGTGTTCGAATCTAACTTACCTGGATTTATCTTCAAACAAGCTACAAGGTAATCTCCCTTCGCAGCTTCGAGTTCCATGTATGGCGTATTTCAATGTCAGCCAGAACAAAATTTCTGGTGTTCTTCCGAGATTTGAGAAAGACGGTTTCTGTACGAGCATGATCCCACAAGAACCAGCTCCCAATTTCTTAGATGAGGAAGACAATTGGAATGCTTACTTCAATGTTCCTGTTTGGGATTTCTCGAGATTGAATGATAATCTCACAATCGCCCATGATTTTAGCTGGAATAGTTTCAGTGGCTCATTAGCTTCATTCAAAGTGGGAGAAGAGCTTCTGGCTAATGGTCGAAAGTTTTCTTACATACTGTTGCTTAATAGCAACCAGTTCAATGGATCACTCCCCATTGATCTGGTCTCGAACTGTAATGATTTGAAGAGCGTTTCGGTTAACTTGAGTTCAAACTTAGTATCAGGTGAGATTTCTGATGCATTCTTTCTCCATTGTCAACAGATGATGGAGTTTGAGGCAGCAAGTAATGAGTTAGATAACTCGATCGGACCTAGAATTGGCGATTTGCGAATGCTTCTTCGTCTCGACTTGAGAGAGAACAGATTGTCTGGAGTTTTACCAGATCAGTTGGGGAAGTTGCAGAGTTTAAAATGGATGCTTTTGGGAGGGAATAACTTGACTGGAGAGATTCCATCTCGACTCGGTCGGTTGGCTTCTCTAACGAGTTTAGATCTGTCCCGAAACGCGTTTACAGGAGTTATCCCTGAAAGCTTAGCATATGCTTCAAGACTTGAGATTCTGTTGCTCGATCATAACAGGTTAACTGGGGAAATTCCCTCTTCTTTCTCTGCCCTTTCTCATCTCACTAAATTGGATGTCTCTTTTAACAACCTTTCTGGCCACATTCCTCATATTCAGCACATGATTGACTGCATTTACTTTAGAGGGAATGAGTTTCTGCATCCTTGCCCGGATTCATACTCCGAATCCCCGGCTGGTCTTCCGGTTCCTCTCGACGTTCAGAAGTGGAAGAGACGGAGAAAGTTTTTGTCCATGATAATCGCTGTGGCTGTTTCCTCAACTCTAATTTGCATACTCTTGATTATAGCTGTTATCATCTTTGCAAAGAAAAGGCTTGGTAGACAAAATAGTTTAAAGAAGAAACTAATGGTGACTTTCTCGGACGCTCCAGCCGAACTGAGTTACGATAATGTGGTTCGAGCTACCGAAAATTTCAGCCTTCGGTATCTAATCGGTACCGGTGGGTTTGGGTCAACATACAAGGCTGAACTGCCCTCAGGTTCCATGGTTGCTGTAAAGAGACTGTCCATTGGTAGGTTTCAAGGAGGCATTCAACAATTCGACGCAGAGATTCGAACCTTGGGAAGAATACGACACAAAAACCTCGTAACACTTCTCGGGTACTACGTCGGAGAGGCTGAAATGTTCTTAGTTTACAACTACCTGTCGGGTGGGAACCTCGAGACATTCATCCACGAAAAATCTTGCAAGCACGTAAAGCACTCGGTGATCCGCAACATCGCTTTGGACATAGCGAGGGCGCTTGCGTACCTGCATTACTCGTGTGTTCCGAGGATTGTTCATAGAGACATCAAGCCTAGCAACATCCTTCTTGATGAAGAGCACAACACATACATATCAGATTTTGGGTTGGCCAGGCTTCTTGAGGTTTCAGAGACTCATGCCACAACAGATGTGGCTGGAACATTTGGATATGTTGCACCAGAATACGCTACCACTTGCAGGGTCTCGGACAAGGCCGATGTTTATAGCTTCGGAGTTGTGCTCTTAGAATTGCTTTCCGGGAAAAGGTCACTCGATCGATCCTTCTCCGACTTCGGGAACGGGTTTAACATTGTTACATGGGCAAAGATGCTGATCAAGGAAGGTCGTTCTTCTGAGCTTTTCACTCCTGAATTGTGGGAAATGGGACCAGAGGAACAGTTACTCGGAATGTTAAAGCTCGCATCGAGTTGCACGGTTGAAATTCTCGCTCTTCGACCGTCGATGAAGCAGGTCGTCGACACACTGAAACAGTTG 3090 44.79 FFFFSLSFAFSGAVASVPADAMSLLRFKDSVCFDSSAVLRGWNLSVSYCDWFGVTCDRVTGRVVELKMNGSDSVLAGTLNPAIGDLAELRVLSLPDNLICGEIPGSIGKLQSLEVLELQGNNFSGKIPRQISYLRSLRLLNLSDNSFSGSIPSKLIGSMKLERIDLSYNQLSGRIQVVDNRCGVLNHLRLSHNFLTDNIPAEIGQCWNLRSLLLDGNILEGRIPAEIGRISELRVLDVSRNSLTDTIPKELGNCRKLSQIVLTNLNDIIPDDDSLRGEFNAFNGGIPSELLLLPSLRVFWAPRANFNGELPSNWSSSCSLRILNLGQNYITGTIPEAIGMCSNLTYLDLSSNKLQGNLPSQLRVPCMAYFNVSQNKISGVLPRFEKDGFCTSMIPQEPAPNFLDEEDNWNAYFNVPVWDFSRLNDNLTIAHDFSWNSFSGSLASFKVGEELLANGRKFSYILLLNSNQFNGSLPIDLVSNCNDLKSVSVNLSSNLVSGEISDAFFLHCQQMMEFEAASNELDNSIGPRIGDLRMLLRLDLRENRLSGVLPDQLGKLQSLKWMLLGGNNLTGEIPSRLGRLASLTSLDLSRNAFTGVIPESLAYASRLEILLLDHNRLTGEIPSSFSALSHLTKLDVSFNNLSGHIPHIQHMIDCIYFRGNEFLHPCPDSYSESPAGLPVPLDVQKWKRRRKFLSMIIAVAVSSTLICILLIIAVIIFAKKRLGRQNSLKKKLMVTFSDAPAELSYDNVVRATENFSLRYLIGTGGFGSTYKAELPSGSMVAVKRLSIGRFQGGIQQFDAEIRTLGRIRHKNLVTLLGYYVGEAEMFLVYNYLSGGNLETFIHEKSCKHVKHSVIRNIALDIARALAYLHYSCVPRIVHRDIKPSNILLDEEHNTYISDFGLARLLEVSETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELLSGKRSLDRSFSDFGNGFNIVTWAKMLIKEGRSSELFTPELWEMGPEEQLLGMLKLASSCTVEILALRPSMKQVVDTLKQL 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19285858 19288947 - MC04g1123 Mch4g1606 686318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1606 1030 Gene3D Ribonuclease Inhibitor 182 275 IPR032675 -
Mch4g1606 1030 CDD STKc_IRAK 761 1030 - -
Mch4g1606 1030 Pfam Leucine Rich Repeat 343 362 IPR001611 GO:0005515(InterPro)
Mch4g1606 1030 Pfam Leucine Rich Repeat 233 254 IPR001611 GO:0005515(InterPro)
Mch4g1606 1030 Pfam Leucine Rich Repeat 185 206 IPR001611 GO:0005515(InterPro)
Mch4g1606 1030 Pfam Leucine Rich Repeat 535 556 IPR001611 GO:0005515(InterPro)
Mch4g1606 1030 Pfam Leucine Rich Repeat 319 339 IPR001611 GO:0005515(InterPro)
Mch4g1606 1030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 876 888 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g1606 1030 Pfam Leucine rich repeat 582 641 IPR001611 GO:0005515(InterPro)
Mch4g1606 1030 Pfam Leucine rich repeat 88 146 IPR001611 GO:0005515(InterPro)
Mch4g1606 1030 Gene3D Transferase(Phosphotransferase) domain 1 832 1030 - -
Mch4g1606 1030 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 180 269 - -
Mch4g1606 1030 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 425 673 - -
Mch4g1606 1030 SUPERFAMILY L domain-like 281 656 - -
Mch4g1606 1030 Pfam Leucine rich repeat N-terminal domain 19 57 IPR013210 -
Mch4g1606 1030 ProSiteProfiles Protein kinase domain profile. 755 1030 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1606 1030 SMART LRR_typ_2 110 133 IPR003591 -
Mch4g1606 1030 SMART LRR_typ_2 580 603 IPR003591 -
Mch4g1606 1030 SMART LRR_typ_2 532 555 IPR003591 -
Mch4g1606 1030 SMART LRR_typ_2 628 654 IPR003591 -
Mch4g1606 1030 SMART LRR_typ_2 230 254 IPR003591 -
Mch4g1606 1030 SMART LRR_typ_2 134 158 IPR003591 -
Mch4g1606 1030 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 719 831 - -
Mch4g1606 1030 SUPERFAMILY RNI-like 75 379 - -
Mch4g1606 1030 Gene3D Ribonuclease Inhibitor 19 181 IPR032675 -
Mch4g1606 1030 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 832 1030 - -
Mch4g1606 1030 Gene3D Ribonuclease Inhibitor 276 404 IPR032675 -
Mch4g1606 1030 Gene3D Ribonuclease Inhibitor 407 677 IPR032675 -
Mch4g1606 1030 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 273 358 - -
Mch4g1606 1030 Pfam Protein kinase domain 760 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1606 1030 SMART serkin_6 755 1030 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1606 1030 Gene3D Phosphorylase Kinase; domain 1 717 831 - -
Mch4g1606 1030 ProSitePatterns Protein kinases ATP-binding region signature. 761 783 IPR017441 GO:0005524(InterPro)
Mch4g1606 1030 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 279 672 - -
Mch4g1606 1030 FunFam Leucine-rich repeat receptor-like protein kinase 18 177 - -
Mch4g1606 1030 SUPERFAMILY Protein kinase-like (PK-like) 731 1027 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1606 Mch-Chr4:19285858 Mch9g2017 Mch-Chr9:21439862 2.93E-64 dispersed
Mch4g1606 Mch-Chr4:19285858 Mch8g2398 Mch-Chr8:27056801 1.70E-133 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77340 PF00069 Pkinase 2.60E-45 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1606 - - - 0.0