Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1635 AACAATGGCTCCATAATCGACCGCCACAACCACCACCAGCAGCAGCCGCAGCAGCAGGCGGCTGTTAATGGCGTTCTTGCTGTCAAGAAACCGCCCTCCAAGGACCGCCATAGCAAGGTCGACGGCCGCGGCCGCCGGATTCGGATGCCGATCATTTGCGCCGCTCGTGTTTTCCAGCTCACCCGTGAGTTGGGCCACAAATCCGACGGCCAGACCATCGAGTGGCTCCTCCGCCAAGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACCACTCCGGCCAGCTTCTCCACTATCTCTGGATCTCTCCGGGGAGTTGTTGGCTGCTCCACCTCCCTCTCTTCCTCTTCCTCTCTTGACCATAAGCCCCTTTTGGCTCCCGCGCCGTTTATTCTCGGGAAGCGCGTCCGGACCGATGATGACGGTGGGAGTAAAGACGACGGCGGCGGAGGAGGAGGCATTTCGGTGGGTCCGACTGTCGGTTCGATTATGGGCCCTGCGGCGGCGGGTGGGTACTGGGCGATTCCGGCCAGGCCAGATTTTGGGCAGGTTTGGAGCTTCGCTGCGGCGGCGGCTGCTGCGGCGCCGGAAATGGTGCTTCAGCCGGCGGCGGTTTCTCATCAGGCGTCGCTGTTTGTTCAGCAGCAGTCGATCGGCGAGGCGTCGGCGGCGAAAGTCGGGAATTACCTTCCGGGGCATCTGAATTTGCTGGCTTCTTTATCGGGCCCCGGAAGTTCTGGCCGGAGAGAC 753 62.95 NNGSIIDRHNHHQQQPQQQAAVNGVLAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTISGSLRGVVGCSTSLSSSSSLDHKPLLAPAPFILGKRVRTDDDGGSKDDGGGGGGISVGPTVGSIMGPAAAGGYWAIPARPDFGQVWSFAAAAAAAAPEMVLQPAAVSHQASLFVQQQSIGEASAAKVGNYLPGHLNLLASLSGPGSSGRRD 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19547238 19547990 - MC04g1150 Mch4g1635 686347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1635 251 MobiDBLite consensus disorder prediction 138 158 - -
Mch4g1635 251 ProSiteProfiles TCP domain profile. 33 87 IPR017887 -
Mch4g1635 251 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 21 142 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
Mch4g1635 251 Pfam TCP family transcription factor 33 107 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1635 K16221 - - csv:101214586 311.227
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0336 Mch-Chr2:2484298 Mch4g1635 Mch-Chr4:19547238 1.85E-24 dispersed
Mch4g1635 Mch-Chr4:19547238 Mch9g2143 Mch-Chr9:22181244 2.70E-33 dispersed
Mch4g1635 Mch-Chr4:19547238 Mch9g1660 Mch-Chr9:18669790 8.79E-103 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1660 . 29 256 TCP Transcription Factor Family AT5G23280 60.7 2.2e-63 239.2
Mch4g1635 . 31 251 TCP Transcription Factor Family AT5G23280 61.5 4.2e-62 235.0
Mch9g2143 . 48 152 TCP Transcription Factor Family AT3G47620 86.0 4.9e-43 172.6
Mch3g1754 . 27 135 TCP Transcription Factor Family AT3G47620 77.1 3.3e-39 159.8
Mch9g2397 . 144 226 TCP Transcription Factor Family AT3G47620 90.4 1.2e-36 151.4
Mch9g2397 . 144 236 TCP Transcription Factor Family AT1G69690 82.8 1.3e-36 150.6
Mch8g1386 . 17 280 TCP Transcription Factor Family AT3G27010 54.9 2.3e-54 209.5
Mch9g1660 . 25 253 TCP Transcription Factor Family AT5G08330 57.3 4.1e-59 224.9
Mch4g1635 . 27 251 TCP Transcription Factor Family AT5G08330 62.9 1.6e-58 223.0
Mch8g2352 . 35 148 TCP Transcription Factor Family AT3G02150 70.0 7.7e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43212 PF03634 TCP 3.50E-31 No_clan Mch TF