Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g1640 | ATGAGTGGAACGATGGAGAATTACTTGAGAAAGAACTTCGAACTCGAGCCGAAGGGCCCCTCCGAGGAGGCTCAAATGCGATGGCGATCCGCGGTCTCCATTGTCAAGAATCGCCGCCGGAGGTTCCGCATGGTTGCCGATCTCGAGAAGCGTGCTCAGGCCGAGGAGAAGCGCAAGAAACTCCAGGAAAAGATACGAGTAGCTCTATACGTGCAAAAAGCAGCATTGCATTTCATTGATGCTGGGAAGCGAGGTGATTACAAGCTCTCTACAGAAGTAAGAGAAGCTGGTTATGGCGTTGAACCTGATGTACTAGCATCCATTGTTCAAACCCACAATACCAAGAGTTTAGAACATTATGGAGGTATTGCGGGATTAGCAAGAGAATTAAAAGTTTCCCTGAAAGATGGGATTCTTTCAAGTGAAATACCTTCAAGGCAGAATATATACAGCGTCAACCGTTACGTTGAGAAACCTTCAAGAGGCATTTGGACGTTCGTATGGGAAGCCCTGCATGACTTGACTCTTATCATTCTCTTGGTTTCTGCCGTGGTTTCTATGGGTGTCGGAAATGCAACTGAAGGTTGGCCTAAAGGCATGTACGACGGACTTGGAATAATACTAAGTATTTTCCTGGTCGTGATAGTAACGGCGGTCAGTGACTACAATCAGTCTTTGCAATTTAAGGACTTGGACAAGCAGAAGAAAAACATTATAATTCAAGTTACTAGAGACGGATGCAAACAGAAGGTTTCTATTTACGACTTGGTGGTTGGGGATATCGTTCATTTGTCTATTGGAGATCAAGTCCCTGCTGATGGCATTTTGGTGTCAGGCTACAGCTTATCGATCGACGAATCGAGCTTGTCAGGTGAAAGCGAACCTGTAAGTGTAGATGACAATAATAGGCCTTTTCTTCTAGCAGGGACCAAAGTGCAGGATGGTTCTGGTAAAATGCTAGTTGCATCGGTTGGGATGAGAACTGAATGGGGAAGATTGATGGTCACTTTGAGTGAAGGGGGAGACGACGAAACGCCACTTCAGGTAAAGCTTAATGGGGTTGCGACAATTATTGGAAAGATCGGCTTGGTTTTCGCGGTGTTAACATTCCTAGTTCTGATTGCAAGGTTTTTTGTGAATAAAGCATTACACAATCAGATTGGGCACTGGTCCTCTGGTGATGCATCAACGCTTCTGAATTACTTTGCCATTGCTGTGATCATAATTGTTGTCGCAGTTCCAGAAGGATTGCCTCTAGCAGTAACACTAAGTCTTGCCTTTGCCATGAAAAGGTTAATGGCGGACAAGGCACTCGTGAGGCATCTCTCTGCTTGTGAGACTATGGGTTCTGCAAGCTGCATTTGCACTGATAAAACAGGTACATTGACAACAAATCATATGGTCGTTGACAAAATGTGGATCTGTGAAGAAACGAGGACAATAAAAAATGCCCATGAAGAGACTGCTTTGAAAACCTCAGTAACTGAAACGGTTTACAATCTCCTCGTACAATCTATATTTCAGAATACTAGCTCAGAGGTGGTCAAAGGCAAAGACGGGAGAAACACGATTTTAGGTACTCCAACTGAGACTGCATTGCTAGAATTTGGTTTGCTTTTGGGCGGTGATTTTGATTCACTGAACGACGAGTATAAGATCGTCAAAGTTGAACCATTCAACTCAAATAGAAAGAAAATGTCGGTTCTCGTGGCTCTTCCTGGTGATGGGTTTCGAGCATGCTGCAAGGGAGCATCAGAGATCATTTTATCCATGTGTGACAAGGTTCTTAGCTCTAATGGAGAAGCAATGCCTCTTTCAGATGAAAAAAGAACAAGCATCTCGAATATCATTAATAGTTTTGCCAGCGACGCTCTTAGAACTCTGTGCATCGCTTACAAGGACATAGAAGTCTTTACAGCACCCGATAGAATTCCCGAGGATGGTTATACTTTAATAGCTGTAATTGGCATTAAAGATCCTGTGCGTCCGGGCGTGAAGGAGGCGGTTCAGGCGTGTTTGGCTGCAGGGATAACTGTAAGGATGGTAACTGGCGATAACATCCACACGGCTAAAGCCATAGCCAAAGAGTGTGGTATCTTGACATCAGATGGTTTAGCAATAGAAGGGCCAGAGTTCCGCAACAAGAGCCCAGATGAAATGGAGAAGTTAATACCAAGACTCCAGGTGATGGCTCGGTCCTCTCCTCTTGACAAGTATACGTTGGTAGTACAGTTGAGGAAAACGTTCAAAGAAGTGGTGGCCGTCACAGGTGATGGGACTAATGATGCCCCTGCTTTGCATGAGGCAGACATTGGATTGGCCATGGGTATTGCGGGAACAGAGGTTGCCAAAGAAAATGCCGACGTAGTCATAATGGATGATAATTTCACAACCATCGTGAATGTTGCTAGATGGGGACGTGCAGTCTACATCAACATTCAGAAGTTTGTACAGTTCCAGCTTACAGTCAACGTTGTCGCTCTCATGCTCAATTTTATATCTGCATGCGCTTCAGGTTCTGCTCCTCTGACTGCTGTTCAAATGCTGTGGGTGAACCTGATCATGGACACGCTGGGCGCGCTGGCTTTGGCCACAGAGCCTCCCACCGACGGGCTGATGCAAAGAAAACCAATTGGGAGAAACGTGAACATCATCACAGGGATCATGTGGAGGAACATCATCGGTCAGAGCATCTACCAAATCACCGTCTTATTGATCCTCAGATTTGAAGGGAAGCGGCTGCTGAAGCTCACTGGCCCAGGCTCAAGCATCATCCTCGACACATTTATTTTCAACTCCTTCGTGTTCAATGAAATAAACAGCCGTGACATGGAGAAGATAAACGTTTTCCGAGGGATGTTCGGGAGCTGGGTTTTCATGGGAGTGATGGCCTCAACAGTAGCATTCCAAGTTATAATCGTTGAATTTCTTGGCACTTTCGCAGAGACAGCGTCACTAAGCTGGAGGTTATGGGCAGCCAGCATCGTAATCGGAGCTCTGAGTTTGCCAATAGCCATGGTTCTCAAATGCATTCCCGTTTCAAACTCCAAAACCACACGTCGTTTCCACGATGGTTATGAGGCCCTCCCCACTGGCCCAGACTTGGCTTGA | 3111 | 45.71 | MSGTMENYLRKNFELEPKGPSEEAQMRWRSAVSIVKNRRRRFRMVADLEKRAQAEEKRKKLQEKIRVALYVQKAALHFIDAGKRGDYKLSTEVREAGYGVEPDVLASIVQTHNTKSLEHYGGIAGLARELKVSLKDGILSSEIPSRQNIYSVNRYVEKPSRGIWTFVWEALHDLTLIILLVSAVVSMGVGNATEGWPKGMYDGLGIILSIFLVVIVTAVSDYNQSLQFKDLDKQKKNIIIQVTRDGCKQKVSIYDLVVGDIVHLSIGDQVPADGILVSGYSLSIDESSLSGESEPVSVDDNNRPFLLAGTKVQDGSGKMLVASVGMRTEWGRLMVTLSEGGDDETPLQVKLNGVATIIGKIGLVFAVLTFLVLIARFFVNKALHNQIGHWSSGDASTLLNYFAIAVIIIVVAVPEGLPLAVTLSLAFAMKRLMADKALVRHLSACETMGSASCICTDKTGTLTTNHMVVDKMWICEETRTIKNAHEETALKTSVTETVYNLLVQSIFQNTSSEVVKGKDGRNTILGTPTETALLEFGLLLGGDFDSLNDEYKIVKVEPFNSNRKKMSVLVALPGDGFRACCKGASEIILSMCDKVLSSNGEAMPLSDEKRTSISNIINSFASDALRTLCIAYKDIEVFTAPDRIPEDGYTLIAVIGIKDPVRPGVKEAVQACLAAGITVRMVTGDNIHTAKAIAKECGILTSDGLAIEGPEFRNKSPDEMEKLIPRLQVMARSSPLDKYTLVVQLRKTFKEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVVIMDDNFTTIVNVARWGRAVYINIQKFVQFQLTVNVVALMLNFISACASGSAPLTAVQMLWVNLIMDTLGALALATEPPTDGLMQRKPIGRNVNIITGIMWRNIIGQSIYQITVLLILRFEGKRLLKLTGPGSSIILDTFIFNSFVFNEINSRDMEKINVFRGMFGSWVFMGVMASTVAFQVIIVEFLGTFAETASLSWRLWAASIVIGALSLPIAMVLKCIPVSNSKTTRRFHDGYEALPTGPDLA | 1036 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 19612194 | 19619033 | + | MC04g1155 | Mch4g1640 | 686352 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g1640 | 1036 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 9 | 53 | IPR024750 | GO:0005516(InterPro) | |
| Mch4g1640 | 1036 | SMART | Cation_ATPase_N_a_2 | 117 | 191 | IPR004014 | - | |
| Mch4g1640 | 1036 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 457 | 463 | IPR018303 | - | |
| Mch4g1640 | 1036 | Gene3D | - | 137 | 338 | - | - | |
| Mch4g1640 | 1036 | Gene3D | - | 452 | 801 | IPR023214 | - | |
| Mch4g1640 | 1036 | Pfam | E1-E2 ATPase | 240 | 433 | - | - | |
| Mch4g1640 | 1036 | SFLD | C1.7: P-type atpase like | 437 | 808 | - | - | |
| Mch4g1640 | 1036 | Coils | Coil | 44 | 65 | - | - | |
| Mch4g1640 | 1036 | FunFam | Calcium-transporting ATPase | 20 | 80 | - | - | |
| Mch4g1640 | 1036 | NCBIfam | HAD-IC family P-type ATPase | 552 | 700 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch4g1640 | 1036 | NCBIfam | HAD-IC family P-type ATPase | 726 | 841 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch4g1640 | 1036 | NCBIfam | HAD-IC family P-type ATPase | 206 | 519 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch4g1640 | 1036 | Gene3D | - | 169 | 1011 | - | - | |
| Mch4g1640 | 1036 | PANTHER | CATION TRANSPORTING ATPASE | 80 | 1014 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Mch4g1640 | 1036 | SUPERFAMILY | HAD-like | 454 | 861 | IPR036412 | - | |
| Mch4g1640 | 1036 | FunFam | Calcium-transporting ATPase | 216 | 338 | - | - | |
| Mch4g1640 | 1036 | Pfam | haloacid dehalogenase-like hydrolase | 639 | 770 | - | - | |
| Mch4g1640 | 1036 | CDD | P-type_ATPase_Ca_PMCA-like | 146 | 889 | - | - | |
| Mch4g1640 | 1036 | Pfam | Cation transporting ATPase, C-terminus | 841 | 1010 | IPR006068 | - | |
| Mch4g1640 | 1036 | Gene3D | - | 465 | 660 | IPR023299 | GO:0000166(InterPro) | |
| Mch4g1640 | 1036 | SUPERFAMILY | Calcium ATPase, transduction domain A | 239 | 334 | IPR008250 | - | |
| Mch4g1640 | 1036 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 111 | 1013 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Mch4g1640 | 1036 | Gene3D | - | 20 | 81 | - | - | |
| Mch4g1640 | 1036 | Pfam | Cation transport ATPase (P-type) | 515 | 595 | - | - | |
| Mch4g1640 | 1036 | FunFam | Calcium-transporting ATPase | 465 | 660 | - | - | |
| Mch4g1640 | 1036 | FunFam | Calcium-transporting ATPase | 773 | 1015 | - | - | |
| Mch4g1640 | 1036 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 461 | 665 | IPR023299 | GO:0000166(InterPro) | |
| Mch4g1640 | 1036 | PRINTS | P-type cation-transporting ATPase superfamily signature | 285 | 299 | - | - | |
| Mch4g1640 | 1036 | PRINTS | P-type cation-transporting ATPase superfamily signature | 653 | 664 | - | - | |
| Mch4g1640 | 1036 | PRINTS | P-type cation-transporting ATPase superfamily signature | 780 | 792 | - | - | |
| Mch4g1640 | 1036 | PRINTS | P-type cation-transporting ATPase superfamily signature | 455 | 469 | - | - | |
| Mch4g1640 | 1036 | PRINTS | P-type cation-transporting ATPase superfamily signature | 756 | 775 | - | - | |
| Mch4g1640 | 1036 | PRINTS | P-type cation-transporting ATPase superfamily signature | 675 | 685 | - | - | |
| Mch4g1640 | 1036 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 118 | 1014 | IPR023298 | - | |
| Mch4g1640 | 1036 | FunFam | Calcium-transporting ATPase | 653 | 801 | - | - | |
| Mch4g1640 | 1036 | Pfam | Cation transporter/ATPase, N-terminus | 118 | 186 | IPR004014 | - | |
| Mch4g1640 | 1036 | SFLD | p-type atpase | 437 | 808 | IPR044492 | - | |
| Mch4g1640 | 1036 | PRINTS | H+-transporting ATPase (proton pump) signature | 613 | 631 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch4g1640 | 1036 | PRINTS | H+-transporting ATPase (proton pump) signature | 756 | 772 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch4g1640 | 1036 | PRINTS | H+-transporting ATPase (proton pump) signature | 788 | 813 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch1g1291 | Mch-Chr1:15068526 | Mch4g1640 | Mch-Chr4:19612194 | 0 | dispersed | |
| Mch4g1640 | Mch-Chr4:19612194 | Mch8g2603 | Mch-Chr8:29182114 | 8.91E-306 | dispersed | |
| Mch4g1640 | Mch-Chr4:19612194 | Mch11g0362 | Mch-Chr11:2235763 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch4g1640 | K01537 | - | csv:101203529 | 1797.33 |