Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1640 ATGAGTGGAACGATGGAGAATTACTTGAGAAAGAACTTCGAACTCGAGCCGAAGGGCCCCTCCGAGGAGGCTCAAATGCGATGGCGATCCGCGGTCTCCATTGTCAAGAATCGCCGCCGGAGGTTCCGCATGGTTGCCGATCTCGAGAAGCGTGCTCAGGCCGAGGAGAAGCGCAAGAAACTCCAGGAAAAGATACGAGTAGCTCTATACGTGCAAAAAGCAGCATTGCATTTCATTGATGCTGGGAAGCGAGGTGATTACAAGCTCTCTACAGAAGTAAGAGAAGCTGGTTATGGCGTTGAACCTGATGTACTAGCATCCATTGTTCAAACCCACAATACCAAGAGTTTAGAACATTATGGAGGTATTGCGGGATTAGCAAGAGAATTAAAAGTTTCCCTGAAAGATGGGATTCTTTCAAGTGAAATACCTTCAAGGCAGAATATATACAGCGTCAACCGTTACGTTGAGAAACCTTCAAGAGGCATTTGGACGTTCGTATGGGAAGCCCTGCATGACTTGACTCTTATCATTCTCTTGGTTTCTGCCGTGGTTTCTATGGGTGTCGGAAATGCAACTGAAGGTTGGCCTAAAGGCATGTACGACGGACTTGGAATAATACTAAGTATTTTCCTGGTCGTGATAGTAACGGCGGTCAGTGACTACAATCAGTCTTTGCAATTTAAGGACTTGGACAAGCAGAAGAAAAACATTATAATTCAAGTTACTAGAGACGGATGCAAACAGAAGGTTTCTATTTACGACTTGGTGGTTGGGGATATCGTTCATTTGTCTATTGGAGATCAAGTCCCTGCTGATGGCATTTTGGTGTCAGGCTACAGCTTATCGATCGACGAATCGAGCTTGTCAGGTGAAAGCGAACCTGTAAGTGTAGATGACAATAATAGGCCTTTTCTTCTAGCAGGGACCAAAGTGCAGGATGGTTCTGGTAAAATGCTAGTTGCATCGGTTGGGATGAGAACTGAATGGGGAAGATTGATGGTCACTTTGAGTGAAGGGGGAGACGACGAAACGCCACTTCAGGTAAAGCTTAATGGGGTTGCGACAATTATTGGAAAGATCGGCTTGGTTTTCGCGGTGTTAACATTCCTAGTTCTGATTGCAAGGTTTTTTGTGAATAAAGCATTACACAATCAGATTGGGCACTGGTCCTCTGGTGATGCATCAACGCTTCTGAATTACTTTGCCATTGCTGTGATCATAATTGTTGTCGCAGTTCCAGAAGGATTGCCTCTAGCAGTAACACTAAGTCTTGCCTTTGCCATGAAAAGGTTAATGGCGGACAAGGCACTCGTGAGGCATCTCTCTGCTTGTGAGACTATGGGTTCTGCAAGCTGCATTTGCACTGATAAAACAGGTACATTGACAACAAATCATATGGTCGTTGACAAAATGTGGATCTGTGAAGAAACGAGGACAATAAAAAATGCCCATGAAGAGACTGCTTTGAAAACCTCAGTAACTGAAACGGTTTACAATCTCCTCGTACAATCTATATTTCAGAATACTAGCTCAGAGGTGGTCAAAGGCAAAGACGGGAGAAACACGATTTTAGGTACTCCAACTGAGACTGCATTGCTAGAATTTGGTTTGCTTTTGGGCGGTGATTTTGATTCACTGAACGACGAGTATAAGATCGTCAAAGTTGAACCATTCAACTCAAATAGAAAGAAAATGTCGGTTCTCGTGGCTCTTCCTGGTGATGGGTTTCGAGCATGCTGCAAGGGAGCATCAGAGATCATTTTATCCATGTGTGACAAGGTTCTTAGCTCTAATGGAGAAGCAATGCCTCTTTCAGATGAAAAAAGAACAAGCATCTCGAATATCATTAATAGTTTTGCCAGCGACGCTCTTAGAACTCTGTGCATCGCTTACAAGGACATAGAAGTCTTTACAGCACCCGATAGAATTCCCGAGGATGGTTATACTTTAATAGCTGTAATTGGCATTAAAGATCCTGTGCGTCCGGGCGTGAAGGAGGCGGTTCAGGCGTGTTTGGCTGCAGGGATAACTGTAAGGATGGTAACTGGCGATAACATCCACACGGCTAAAGCCATAGCCAAAGAGTGTGGTATCTTGACATCAGATGGTTTAGCAATAGAAGGGCCAGAGTTCCGCAACAAGAGCCCAGATGAAATGGAGAAGTTAATACCAAGACTCCAGGTGATGGCTCGGTCCTCTCCTCTTGACAAGTATACGTTGGTAGTACAGTTGAGGAAAACGTTCAAAGAAGTGGTGGCCGTCACAGGTGATGGGACTAATGATGCCCCTGCTTTGCATGAGGCAGACATTGGATTGGCCATGGGTATTGCGGGAACAGAGGTTGCCAAAGAAAATGCCGACGTAGTCATAATGGATGATAATTTCACAACCATCGTGAATGTTGCTAGATGGGGACGTGCAGTCTACATCAACATTCAGAAGTTTGTACAGTTCCAGCTTACAGTCAACGTTGTCGCTCTCATGCTCAATTTTATATCTGCATGCGCTTCAGGTTCTGCTCCTCTGACTGCTGTTCAAATGCTGTGGGTGAACCTGATCATGGACACGCTGGGCGCGCTGGCTTTGGCCACAGAGCCTCCCACCGACGGGCTGATGCAAAGAAAACCAATTGGGAGAAACGTGAACATCATCACAGGGATCATGTGGAGGAACATCATCGGTCAGAGCATCTACCAAATCACCGTCTTATTGATCCTCAGATTTGAAGGGAAGCGGCTGCTGAAGCTCACTGGCCCAGGCTCAAGCATCATCCTCGACACATTTATTTTCAACTCCTTCGTGTTCAATGAAATAAACAGCCGTGACATGGAGAAGATAAACGTTTTCCGAGGGATGTTCGGGAGCTGGGTTTTCATGGGAGTGATGGCCTCAACAGTAGCATTCCAAGTTATAATCGTTGAATTTCTTGGCACTTTCGCAGAGACAGCGTCACTAAGCTGGAGGTTATGGGCAGCCAGCATCGTAATCGGAGCTCTGAGTTTGCCAATAGCCATGGTTCTCAAATGCATTCCCGTTTCAAACTCCAAAACCACACGTCGTTTCCACGATGGTTATGAGGCCCTCCCCACTGGCCCAGACTTGGCTTGA 3111 45.71 MSGTMENYLRKNFELEPKGPSEEAQMRWRSAVSIVKNRRRRFRMVADLEKRAQAEEKRKKLQEKIRVALYVQKAALHFIDAGKRGDYKLSTEVREAGYGVEPDVLASIVQTHNTKSLEHYGGIAGLARELKVSLKDGILSSEIPSRQNIYSVNRYVEKPSRGIWTFVWEALHDLTLIILLVSAVVSMGVGNATEGWPKGMYDGLGIILSIFLVVIVTAVSDYNQSLQFKDLDKQKKNIIIQVTRDGCKQKVSIYDLVVGDIVHLSIGDQVPADGILVSGYSLSIDESSLSGESEPVSVDDNNRPFLLAGTKVQDGSGKMLVASVGMRTEWGRLMVTLSEGGDDETPLQVKLNGVATIIGKIGLVFAVLTFLVLIARFFVNKALHNQIGHWSSGDASTLLNYFAIAVIIIVVAVPEGLPLAVTLSLAFAMKRLMADKALVRHLSACETMGSASCICTDKTGTLTTNHMVVDKMWICEETRTIKNAHEETALKTSVTETVYNLLVQSIFQNTSSEVVKGKDGRNTILGTPTETALLEFGLLLGGDFDSLNDEYKIVKVEPFNSNRKKMSVLVALPGDGFRACCKGASEIILSMCDKVLSSNGEAMPLSDEKRTSISNIINSFASDALRTLCIAYKDIEVFTAPDRIPEDGYTLIAVIGIKDPVRPGVKEAVQACLAAGITVRMVTGDNIHTAKAIAKECGILTSDGLAIEGPEFRNKSPDEMEKLIPRLQVMARSSPLDKYTLVVQLRKTFKEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVVIMDDNFTTIVNVARWGRAVYINIQKFVQFQLTVNVVALMLNFISACASGSAPLTAVQMLWVNLIMDTLGALALATEPPTDGLMQRKPIGRNVNIITGIMWRNIIGQSIYQITVLLILRFEGKRLLKLTGPGSSIILDTFIFNSFVFNEINSRDMEKINVFRGMFGSWVFMGVMASTVAFQVIIVEFLGTFAETASLSWRLWAASIVIGALSLPIAMVLKCIPVSNSKTTRRFHDGYEALPTGPDLA 1036
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 19612194 19619033 + MC04g1155 Mch4g1640 686352
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1640 1036 Pfam Ca2+-ATPase N terminal autoinhibitory domain 9 53 IPR024750 GO:0005516(InterPro)
Mch4g1640 1036 SMART Cation_ATPase_N_a_2 117 191 IPR004014 -
Mch4g1640 1036 ProSitePatterns E1-E2 ATPases phosphorylation site. 457 463 IPR018303 -
Mch4g1640 1036 Gene3D - 137 338 - -
Mch4g1640 1036 Gene3D - 452 801 IPR023214 -
Mch4g1640 1036 Pfam E1-E2 ATPase 240 433 - -
Mch4g1640 1036 SFLD C1.7: P-type atpase like 437 808 - -
Mch4g1640 1036 Coils Coil 44 65 - -
Mch4g1640 1036 FunFam Calcium-transporting ATPase 20 80 - -
Mch4g1640 1036 NCBIfam HAD-IC family P-type ATPase 552 700 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch4g1640 1036 NCBIfam HAD-IC family P-type ATPase 726 841 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch4g1640 1036 NCBIfam HAD-IC family P-type ATPase 206 519 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch4g1640 1036 Gene3D - 169 1011 - -
Mch4g1640 1036 PANTHER CATION TRANSPORTING ATPASE 80 1014 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Mch4g1640 1036 SUPERFAMILY HAD-like 454 861 IPR036412 -
Mch4g1640 1036 FunFam Calcium-transporting ATPase 216 338 - -
Mch4g1640 1036 Pfam haloacid dehalogenase-like hydrolase 639 770 - -
Mch4g1640 1036 CDD P-type_ATPase_Ca_PMCA-like 146 889 - -
Mch4g1640 1036 Pfam Cation transporting ATPase, C-terminus 841 1010 IPR006068 -
Mch4g1640 1036 Gene3D - 465 660 IPR023299 GO:0000166(InterPro)
Mch4g1640 1036 SUPERFAMILY Calcium ATPase, transduction domain A 239 334 IPR008250 -
Mch4g1640 1036 NCBIfam calcium-translocating P-type ATPase, PMCA-type 111 1013 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
Mch4g1640 1036 Gene3D - 20 81 - -
Mch4g1640 1036 Pfam Cation transport ATPase (P-type) 515 595 - -
Mch4g1640 1036 FunFam Calcium-transporting ATPase 465 660 - -
Mch4g1640 1036 FunFam Calcium-transporting ATPase 773 1015 - -
Mch4g1640 1036 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 461 665 IPR023299 GO:0000166(InterPro)
Mch4g1640 1036 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Mch4g1640 1036 PRINTS P-type cation-transporting ATPase superfamily signature 653 664 - -
Mch4g1640 1036 PRINTS P-type cation-transporting ATPase superfamily signature 780 792 - -
Mch4g1640 1036 PRINTS P-type cation-transporting ATPase superfamily signature 455 469 - -
Mch4g1640 1036 PRINTS P-type cation-transporting ATPase superfamily signature 756 775 - -
Mch4g1640 1036 PRINTS P-type cation-transporting ATPase superfamily signature 675 685 - -
Mch4g1640 1036 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1014 IPR023298 -
Mch4g1640 1036 FunFam Calcium-transporting ATPase 653 801 - -
Mch4g1640 1036 Pfam Cation transporter/ATPase, N-terminus 118 186 IPR004014 -
Mch4g1640 1036 SFLD p-type atpase 437 808 IPR044492 -
Mch4g1640 1036 PRINTS H+-transporting ATPase (proton pump) signature 613 631 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch4g1640 1036 PRINTS H+-transporting ATPase (proton pump) signature 756 772 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch4g1640 1036 PRINTS H+-transporting ATPase (proton pump) signature 788 813 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1291 Mch-Chr1:15068526 Mch4g1640 Mch-Chr4:19612194 0 dispersed
Mch4g1640 Mch-Chr4:19612194 Mch8g2603 Mch-Chr8:29182114 8.91E-306 dispersed
Mch4g1640 Mch-Chr4:19612194 Mch11g0362 Mch-Chr11:2235763 0 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1640 K01537 - csv:101203529 1797.33