Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g1641 | ATGGCGAGCAGGTACTGGATGGTCTCATTACCGGTTCAAGGCACCGCTTCTTCCTTATGGAATCGTCTCCAAGAACAAATCTCCAAGAACTCTTTCGATACTCCTCTCTACAGATTCAATATTCCTAATCTCCGCGTTGGAACGCTAGATTCGCTCCTTTCCCTCAGCGATGATCTCCTCAAGTCGAACAGCTTTGTGGAAGGAGTTTCCCACAAGATCAGACGGCAGATCGAGGAACTGGAGAAGGTTTCAGGTGTGGAGAGCAATGTTCTGACAGTTGATGGAGTTCCCGTTGATTCGTATCTCACTAGGTTTGTATGGGATGAAGCCAAGTACCCAACAATGTCGCCTCTGAGAGACATTGTGGATAGCATTCACAGTCAAGTGGCCAAGATTGAGGATGACCTCAAGATTCGGGTTTCTGAGTACAATAATGTGCGGAGTCAACTTAATGCCATTAACAGAAAGCAAAGTGGAAGCTTGGCAGTCCGTGATATTTCCAATCTTGTAAAACCAGAAGACATAATTACCTCAGAACATCTAGCAACTCTTCTTGTAATTGTTCCCAAGTACTCACAGAAAGAATGGCTATCTACCTATGAAATACTGACTAGCTATGTGGTTCCCAGGTCTTCCAAGAAGTTATTCGAGGATAATGAATATGCCCTTTACACTGTAACACTCTTTAGTCGCGTTGCAGACAATTTCAAAACAAGTGCACGTGAAAAAGGGTTCCAGATTCGTGAATTTGAATATAGTCCAGAAGCACAAGAGAGTAGAAAACAGGAGTTAGAAAAGTTGAAGGAGGACCAGGAAAGTTTGAGAAGTTCTTTATTGCAGTGGTCCTATGCTAGTTACGCTGAGGTTTTCATTTCCTGGATGCACTTTTCTGCTGTACGTGTCTTTGCTGAGAGTATCCTGAGATATGGTTTACCACCATCCTTCTTGGCATCTGTATTGGCACCAGCTGTTAAAAGTGAGAAGAAAACAAGGTCAATCCTTGAAGGTTTGTGTGACAGTACTAACAGTACATATTGGAAAAGTGAAGATGAAGCGGGAGGAGGAATTGCTGGTCTGGGAGGAGATTCTGATGCACACCCATATGTCTCCTTCACAATCAATCTTGCCTAA | 1131 | 43.41 | MASRYWMVSLPVQGTASSLWNRLQEQISKNSFDTPLYRFNIPNLRVGTLDSLLSLSDDLLKSNSFVEGVSHKIRRQIEELEKVSGVESNVLTVDGVPVDSYLTRFVWDEAKYPTMSPLRDIVDSIHSQVAKIEDDLKIRVSEYNNVRSQLNAINRKQSGSLAVRDISNLVKPEDIITSEHLATLLVIVPKYSQKEWLSTYEILTSYVVPRSSKKLFEDNEYALYTVTLFSRVADNFKTSAREKGFQIREFEYSPEAQESRKQELEKLKEDQESLRSSLLQWSYASYAEVFISWMHFSAVRVFAESILRYGLPPSFLASVLAPAVKSEKKTRSILEGLCDSTNSTYWKSEDEAGGGIAGLGGDSDAHPYVSFTINLA | 376 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 19620944 | 19626597 | - | MC04g1156 | Mch4g1641 | 686353 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g1641 | 376 | Coils | Coil | 257 | 277 | - | - | |
| Mch4g1641 | 376 | Pfam | V-ATPase subunit C | 5 | 369 | IPR004907 | GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Mch4g1641 | 376 | SUPERFAMILY | Vacuolar ATP synthase subunit C | 2 | 375 | IPR036132 | GO:0015078(InterPro)|GO:0033180(InterPro)|GO:1902600(InterPro) | |
| Mch4g1641 | 376 | CDD | V-ATPase_C | 5 | 373 | IPR004907 | GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
| Mch4g1641 | 376 | FunFam | V-type proton ATPase subunit C | 163 | 251 | - | - | |
| Mch4g1641 | 376 | Gene3D | Vacuolar atp synthase subunit c; domain 1 | 5 | 334 | - | - | |
| Mch4g1641 | 376 | Gene3D | - | 41 | 312 | - | - | |
| Mch4g1641 | 376 | Gene3D | - | 163 | 251 | - | - | |
| Mch4g1641 | 376 | PANTHER | V-TYPE PROTON ATPASE SUBUNIT C | 1 | 375 | IPR004907 | GO:0000221(PANTHER)|GO:0033180(InterPro)|GO:0046961(PANTHER)|GO:0046961(InterPro)|GO:1902600(InterPro) |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch4g1641 | K02148 | - | - | csv:101221574 | 680.248 |
Syn-Families
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Mch8g0622 | . | 6 | 961 | Primary Pumps ATPases(2) | AT1G10130 | 84.2 | 0.0e+00 | 1563.1 | |
| Mch2g0972 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 80.8 | 0.0e+00 | 1332.0 | |
| Mch8g0816 | . | 2 | 804 | Primary Pumps ATPases(2) | AT2G28520 | 62.3 | 1.6e-296 | 1015.4 | |
| Mch4g0569 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.5 | 1.5e-291 | 998.8 | |
| Mch4g0569 | . | 6 | 819 | Primary Pumps ATPases(2) | AT2G21410 | 76.2 | 0.0e+00 | 1234.9 | |
| Mch8g0816 | . | 1 | 810 | Primary Pumps ATPases(2) | AT2G21410 | 73.6 | 0.0e+00 | 1212.2 | |
| Mch2g0972 | . | 9 | 820 | Primary Pumps ATPases(2) | AT2G21410 | 62.2 | 1.6e-296 | 1015.4 | |
| Mch4g0569 | . | 1 | 819 | Primary Pumps ATPases(2) | AT4G39080 | 77.0 | 0.0e+00 | 1237.6 | |
| Mch8g0816 | . | 1 | 810 | Primary Pumps ATPases(2) | AT4G39080 | 74.4 | 0.0e+00 | 1202.6 | |
| Mch2g0972 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.7 | 4.7e-296 | 1013.8 | |
| Mch11g0830 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 9.9e-61 | 229.6 | |
| Mch8g0829 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.3e-60 | 229.2 | |
| Mch8g0830 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.3e-60 | 229.2 | |
| Mch8g0830 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.3e-66 | 249.6 | |
| Mch11g0830 | . | 3 | 166 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.7e-66 | 249.2 | |
| Mch8g0829 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 2.9e-66 | 248.4 | |
| Mch8g0830 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.1e-74 | 274.2 | |
| Mch11g0830 | . | 2 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 98.2 | 6.9e-74 | 273.5 | |
| Mch8g0829 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 2.0e-73 | 271.9 | |
| Mch8g0830 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.1e-52 | 202.6 | |
| Mch8g0829 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 2.5e-52 | 201.4 | |
| Mch11g0830 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 4.3e-52 | 200.7 | |
| Mch8g0419 | . | 1 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 83.3 | 3.1e-72 | 268.5 | |
| Mch11g0579 | . | 1 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 80.6 | 3.2e-69 | 258.5 | |
| Mch11g0830 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 2.8e-60 | 228.0 | |
| Mch8g0829 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.7e-60 | 227.6 | |
| Mch8g0830 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.7e-60 | 227.6 | |
| Mch8g0419 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 76.7 | 1.7e-77 | 285.8 | |
| Mch11g0579 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 5.7e-73 | 270.8 | |
| Mch3g0360 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07810 | 80.6 | 0.0e+00 | 1673.7 | |
| Mch3g0360 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07670 | 80.5 | 0.0e+00 | 1674.1 | |
| Mch8g0622 | . | 6 | 961 | Primary Pumps ATPases(2) | AT1G10130 | 84.2 | 0.0e+00 | 1563.1 | |
| Mch3g0360 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 66.0 | 0.0e+00 | 1326.2 | |
| Mch3g0098 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.1 | 2.1e-57 | 218.4 | |
| Mch4g0469 | . | 6 | 490 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 4.2e-268 | 920.2 | |
| Mch4g1641 | . | 1 | 377 | Primary Pumps ATPases(2) | AT1G12840 | 82.5 | 1.1e-178 | 622.9 | |
| Mch4g0074 | . | 1 | 262 | Primary Pumps ATPases(2) | AT3G58730 | 80.5 | 5.2e-116 | 414.1 | |
| Mch1g0992 | . | 3 | 455 | Primary Pumps ATPases(2) | AT3G42050 | 80.4 | 4.4e-208 | 720.7 | |
| Mch8g0830 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.1e-74 | 274.2 | |
| Mch11g0830 | . | 2 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 98.2 | 6.9e-74 | 273.5 | |
| Mch8g0829 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 2.0e-73 | 271.9 | |
| Mch4g0469 | . | 1 | 490 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 1.7e-269 | 924.9 | |
| Mch8g1369 | . | 1 | 184 | Primary Pumps ATPases(2) | AT1G64200 | 74.9 | 6.6e-68 | 253.8 | |
| Mch4g0469 | . | 9 | 490 | Primary Pumps ATPases(2) | AT1G20260 | 95.6 | 4.6e-267 | 916.8 | |
| Mch2g0972 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 80.8 | 0.0e+00 | 1332.0 | |
| Mch8g0816 | . | 2 | 804 | Primary Pumps ATPases(2) | AT2G28520 | 62.3 | 1.6e-296 | 1015.4 | |
| Mch4g0569 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.5 | 1.5e-291 | 998.8 | |
| Mch8g1538 | . | 1 | 352 | Primary Pumps ATPases(2) | AT3G28715 | 91.8 | 5.9e-192 | 666.8 | |
| Mch8g1369 | . | 1 | 230 | Primary Pumps ATPases(2) | AT4G11150 | 79.2 | 1.4e-93 | 339.3 | |
| Mch9g0146 | . | 1 | 624 | Primary Pumps ATPases(2) | AT1G78900 | 93.1 | 0.0e+00 | 1173.3 | |
| Mch4g0469 | . | 6 | 490 | Primary Pumps ATPases(2) | AT1G76030 | 96.1 | 4.2e-268 | 920.2 | |
| Mch4g0469 | . | 1 | 490 | Primary Pumps ATPases(2) | AT4G38510 | 95.9 | 1.7e-269 | 924.9 | |
| Mch4g0469 | . | 9 | 490 | Primary Pumps ATPases(2) | AT1G20260 | 95.6 | 4.6e-267 | 916.8 | |
| Mch4g1641 | . | 1 | 377 | Primary Pumps ATPases(2) | AT1G12840 | 82.5 | 1.1e-178 | 622.9 | |
| Mch4g0074 | . | 1 | 262 | Primary Pumps ATPases(2) | AT3G58730 | 80.5 | 5.2e-116 | 414.1 | |
| Mch8g1369 | . | 1 | 230 | Primary Pumps ATPases(2) | AT4G11150 | 79.2 | 1.4e-93 | 339.3 | |
| Mch8g1369 | . | 1 | 223 | Primary Pumps ATPases(2) | AT3G08560 | 68.6 | 1.8e-75 | 279.3 | |
| Mch8g1369 | . | 1 | 184 | Primary Pumps ATPases(2) | AT1G64200 | 74.9 | 6.6e-68 | 253.8 | |
| Mch3g0098 | . | 1 | 126 | Primary Pumps ATPases(2) | AT4G02620 | 84.1 | 2.1e-57 | 218.4 | |
| Mch1g0992 | . | 3 | 455 | Primary Pumps ATPases(2) | AT3G42050 | 80.4 | 4.4e-208 | 720.7 | |
| Mch2g0972 | . | 1 | 814 | Primary Pumps ATPases(2) | AT2G28520 | 80.8 | 0.0e+00 | 1332.0 | |
| Mch8g0816 | . | 2 | 804 | Primary Pumps ATPases(2) | AT2G28520 | 62.3 | 1.6e-296 | 1015.4 | |
| Mch4g0569 | . | 10 | 813 | Primary Pumps ATPases(2) | AT2G28520 | 62.5 | 1.5e-291 | 998.8 | |
| Mch4g0569 | . | 6 | 819 | Primary Pumps ATPases(2) | AT2G21410 | 76.2 | 0.0e+00 | 1234.9 | |
| Mch8g0816 | . | 1 | 810 | Primary Pumps ATPases(2) | AT2G21410 | 73.6 | 0.0e+00 | 1212.2 | |
| Mch2g0972 | . | 9 | 820 | Primary Pumps ATPases(2) | AT2G21410 | 62.2 | 1.6e-296 | 1015.4 | |
| Mch4g0569 | . | 1 | 819 | Primary Pumps ATPases(2) | AT4G39080 | 77.0 | 0.0e+00 | 1237.6 | |
| Mch8g0816 | . | 1 | 810 | Primary Pumps ATPases(2) | AT4G39080 | 74.4 | 0.0e+00 | 1202.6 | |
| Mch2g0972 | . | 9 | 818 | Primary Pumps ATPases(2) | AT4G39080 | 63.7 | 4.7e-296 | 1013.8 | |
| Mch11g0830 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 9.9e-61 | 229.6 | |
| Mch8g0829 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.3e-60 | 229.2 | |
| Mch8g0830 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G34720 | 99.3 | 1.3e-60 | 229.2 | |
| Mch8g0830 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 1.1e-52 | 202.6 | |
| Mch8g0829 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 98.4 | 2.5e-52 | 201.4 | |
| Mch11g0830 | . | 1 | 122 | Primary Pumps ATPases(2) | AT1G19910 | 97.5 | 4.3e-52 | 200.7 | |
| Mch11g0830 | . | 28 | 166 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 2.8e-60 | 228.0 | |
| Mch8g0829 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.7e-60 | 227.6 | |
| Mch8g0830 | . | 28 | 165 | Primary Pumps ATPases(2) | AT4G38920 | 99.3 | 3.7e-60 | 227.6 | |
| Mch8g0830 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.3e-66 | 249.6 | |
| Mch11g0830 | . | 3 | 166 | Primary Pumps ATPases(2) | AT1G75630 | 80.8 | 1.7e-66 | 249.2 | |
| Mch8g0829 | . | 2 | 165 | Primary Pumps ATPases(2) | AT1G75630 | 80.3 | 2.9e-66 | 248.4 | |
| Mch8g0830 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 99.4 | 4.1e-74 | 274.2 | |
| Mch11g0830 | . | 2 | 166 | Primary Pumps ATPases(2) | AT2G16510 | 98.2 | 6.9e-74 | 273.5 | |
| Mch8g0829 | . | 3 | 165 | Primary Pumps ATPases(2) | AT2G16510 | 98.8 | 2.0e-73 | 271.9 | |
| Mch8g0419 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 76.7 | 1.7e-77 | 285.8 | |
| Mch11g0579 | . | 1 | 180 | Primary Pumps ATPases(2) | AT4G32530 | 73.3 | 5.7e-73 | 270.8 | |
| Mch8g0419 | . | 1 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 83.3 | 3.1e-72 | 268.5 | |
| Mch11g0579 | . | 1 | 180 | Primary Pumps ATPases(2) | AT2G25610 | 80.6 | 3.2e-69 | 258.5 | |
| Mch8g1538 | . | 1 | 352 | Primary Pumps ATPases(2) | AT3G28710 | 94.0 | 5.1e-199 | 690.3 | |
| Mch8g1538 | . | 1 | 352 | Primary Pumps ATPases(2) | AT3G28715 | 91.8 | 5.9e-192 | 666.8 | |
| Mch3g0360 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07810 | 80.6 | 0.0e+00 | 1673.7 | |
| Mch3g0360 | . | 22 | 1046 | Primary Pumps ATPases(2) | AT4G00900 | 66.0 | 0.0e+00 | 1326.2 | |
| Mch8g0622 | . | 6 | 961 | Primary Pumps ATPases(2) | AT1G10130 | 84.2 | 0.0e+00 | 1563.1 | |
| Mch3g0360 | . | 1 | 1066 | Primary Pumps ATPases(2) | AT1G07670 | 80.5 | 0.0e+00 | 1674.1 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0007861 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 2 | 36 |