Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1644 CAGGTAATTGATCCGAGGAGGCTGAAGTTTCTTTTCCAAAAGGAGCTGAGGAACAGTGATGTTAGCTCTCTTAGGAGAATGATACTCCCAAAGAAAGCAGCTGAAGCTCATCTGCCAGCTTTGGAGTCCAAAGAAGGGATTATTATGACAATGGATGACTTGGATGGGGCACATGTTTGGAGCTTCAAATACAGGTTTTGGCCAAATAACAATAGTCGAATGTATGTACTTGAAAATACTGGGGACTTTGTCAATGCCCATGGCTTACAACTTGGAGATTTCATCATGGTTTACCAAGATCACCAAAATCACAAATATGCCATTCAAGCCAAAAAAGCCTCCGAGCAAGAGATATATTCCGACATAGCAAAGAACGTCGTCGACGTCGAGATCAACGACATCATCTTTAGCGACTACGATGATGTTACCAAAGCCAACCCCATATACATGCCTTATCCAACCGTGGACGATGATCCCGGCATGTCGTTCATCTACGACACCAGTTCTGCCTTCGCGGACGACTCACCCTTCGACTTTCTGGATGGATCAATGACCACCAACTACTCGAGAATGGGACCTCTTGAAGGATTCGGGTCGGTCGAAAACCTATCTCTCGACGACTTCTAC 627 45.3 QVIDPRRLKFLFQKELRNSDVSSLRRMILPKKAAEAHLPALESKEGIIMTMDDLDGAHVWSFKYRFWPNNNSRMYVLENTGDFVNAHGLQLGDFIMVYQDHQNHKYAIQAKKASEQEIYSDIAKNVVDVEINDIIFSDYDDVTKANPIYMPYPTVDDDPGMSFIYDTSSAFADDSPFDFLDGSMTTNYSRMGPLEGFGSVENLSLDDFY 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19645237 19646346 - MC04g1159 Mch4g1644 686356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1644 209 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 8 113 IPR044800 GO:0003700(InterPro)
Mch4g1644 209 Gene3D - 8 126 IPR015300 -
Mch4g1644 209 FunFam B3 domain-containing transcription factor FUS3 8 122 - -
Mch4g1644 209 Pfam B3 DNA binding domain 12 108 IPR003340 GO:0003677(InterPro)
Mch4g1644 209 SUPERFAMILY DNA-binding pseudobarrel domain 10 106 IPR015300 -
Mch4g1644 209 SMART B3_2 12 114 IPR003340 GO:0003677(InterPro)
Mch4g1644 209 ProSiteProfiles B3 DNA-binding domain profile. 12 114 IPR003340 GO:0003677(InterPro)
Mch4g1644 209 CDD B3_DNA 10 112 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1644 Mch-Chr4:19645237 Mch9g0063 Mch-Chr9:496327 6.63E-35 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43214 PF02362 B3 1.10E-17 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1644 K09287 - csv:101222512 322.783