Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1648 GGAGGGGAAAAGAAGTGCTTGAATTCAGAGCTATGGCATGCATGCGCGGGGCCCCTTGTGTCTCTCCCAACTGCTGGGACTCGGGTTGTCTACTTCCCTCAGGGTCATAGCGAACAGGTTGCTGCCACGACGAACAAAGAAGTTGATGGGCATATACCCAATTACCCGAATCTACCTCCCCAGTTGATATGTCAGCTGCACAATGTAACGATGCATGTGGATGTGGAAACAGATGAAGTGTATGCACAAATGACACTACAGCCGTTGACTGCACAAGAGCAAAAGGATACGTTTCTACCCATGGAGTTGGGGATTCCGAGTAGACAGCCAACAAATTACTTTTGCAAAACGTTGACAGCAAGTGATACAAGTACCCATGGAGGGTTCTCTGTACCGCGTCGTGCTGCAGAGAAAGTTTTTCCTCCACTGGATTTTACGCAACAGCCACCAGCACAAGAGCTAATTGCGAGGGATCTTCATGATGTTGAATGGAAGTTTAGGCATATTTTTCGAGGACAGCCAAAACGACATCTTCTTACAACTGGTTGGAGTGTGTTTGTTAGTGCCAAAAGATTGGTTGCTGGAGATTCTGTACTTTTTATATGGAACGAAAAAAATCAACTTCTTTTGGGTATTCGGCGTGCCACAAGACCACAAACTGTGATGCCATCTTCTGTTTTGTCAAGTGATAGCATGCACATTGGGCTCCTTGCTGCTGCAGCTCATGCTGCTGCAACTAATAGCTGTTTCACAGTTTTCTATAACCCCAGGGCTAGCCCATCAGAGTTTGTCATCCCTCTGACAAAATATGTTAAAGCTGTATTTCATACCCGTGTTTCAGTAGGGATGCGTTTCCGGATGCTTTTTGAGACTGAAGAGTCAAGTGTTCGAAGGTACATGGGTACTATAACTGGAATAAGTGATCTTGACCCTGTTCGTTGGGCGAATTCTCATTGGCGTTCTGTTAAGGTAGGGTGGGATGAGTCAACAGCTGGGGAGAGGCAGCCAAGGGTATCACTATGGGAAATTGAGCCTTTAACTACATTTCCTATGTATCCTTCTCTGTTTCCACTTAGACTGAAACGTCCATGGCATCCTGGTGTCTCTTCTGTTCATGATAACAGAGATGATGCATCTAATGGCTTGATGTGGCTACGTGGAGGAGCCGGGGAACAGGGTCTACACTCACTGAATTTGCAATCTGTGGGCTCATTGCCCTGGTTGCAGCAGAGAATTGATTCTTCCATGTTTGGAAATGATCATAATCAACAGTATCAAGCCATGTTGGCTGCTGGAATGCCGAACCTTGGAGGTGTTGATATGCTGAGGCAGCAAATTATGCATCTTCAACAGCCTTTCCAATACATTCAACCAGCAGGCTTCCATAATTCTCTGTTGCAGCTGCAGCAGCAACAGCAGCAGCAGCAGCAGCAATTGGTTCAACAATCTATGCCTCAGAACATCCTGCAGGCACCAAGCCAAGTGATGGCAGAAAATCTACCCCAACACATTCTCCAGCAAACCCTGCAAAATCAACCTGAGGATCTGCCTGACCAGCAACAGCATACTTCTTATCATGATACCCTTCAGGTTCAAAGCAATCAATTTCATCAGGGTGGGCATTCGAACGTGCCATCACCCACGTTTCCTAGAACGGACCTTATGGATTCCAACACAAATTACTCGGAATCCATTACCTCTAGAAGAAACATACTTGCTTCATCATGTCCTGAAGGGACTGGCAACCTTTCCAATATCTATAGAAGTGGGCAGCCAATCCTAACTGAGCAGTTAACTCAACAATCACATGTTTCTAAGAATGCCCCTTCACAGGTTGATGCTCACGCGAACTCAATGTCCTTTCCACCATTTTCTGGTAGAGACTCAATTTTGGAGCTGGGAAATTGTAATTCAGATGCTCCAAGTCCTACACTTTTTGGTGTAAATATAGATTCATCTGGACTCTTACTTCCATCTAATGTGCCCACTTTTGCTTCTCCTTCGATTGGTCCTGATTCATCCTCAATGCCACTGGGAGATTCTGGATTTCAAAATTCTCTGTACAGTTGTGTTCAAGACTCTTCTGAGTTGTTGCACAGCTCAGGGCAAGTTGATCCATCAAATCCAACTCGGACATTTGTGAAGGTTTACAAGTCCGGATCTGTTGGGCGCTCACTAGACATCTCCCGGTTCAGCAGCTATCAGGAGCTGCGAGAGGAGCTGGCTCAGATGTTTGGAATCGAGGGACAGTTGGAAGACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTACTTCTCCTTGGAGATGACCCTTGGGAGGCATTTGTCAATAATGTCTGGTATATCAAGATACTTTCTCCCCAAGATTTTCAGAAACTAGGGGAGCAGGCGATTGAATCCTTCAACCCTATGGTCGGTCAGCGAGTAACTAGTGGTGGCAATGAAGCTGAAAATGTTTCGGGGCTACCATCGGTTGGTTCACTGGAATACTGA 2511 45.96 GGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNKEVDGHIPNYPNLPPQLICQLHNVTMHVDVETDEVYAQMTLQPLTAQEQKDTFLPMELGIPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGVSSVHDNRDDASNGLMWLRGGAGEQGLHSLNLQSVGSLPWLQQRIDSSMFGNDHNQQYQAMLAAGMPNLGGVDMLRQQIMHLQQPFQYIQPAGFHNSLLQLQQQQQQQQQQLVQQSMPQNILQAPSQVMAENLPQHILQQTLQNQPEDLPDQQQHTSYHDTLQVQSNQFHQGGHSNVPSPTFPRTDLMDSNTNYSESITSRRNILASSCPEGTGNLSNIYRSGQPILTEQLTQQSHVSKNAPSQVDAHANSMSFPPFSGRDSILELGNCNSDAPSPTLFGVNIDSSGLLLPSNVPTFASPSIGPDSSSMPLGDSGFQNSLYSCVQDSSELLHSSGQVDPSNPTRTFVKVYKSGSVGRSLDISRFSSYQELREELAQMFGIEGQLEDPHRSGWQLVFVDRENDVLLLGDDPWEAFVNNVWYIKILSPQDFQKLGEQAIESFNPMVGQRVTSGGNEAENVSGLPSVGSLEY 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19671306 19696068 - MC04g1163 Mch4g1648 686360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1648 836 SUPERFAMILY CAD & PB1 domains 703 785 - -
Mch4g1648 836 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 802 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch4g1648 836 Pfam B3 DNA binding domain 114 215 IPR003340 GO:0003677(InterPro)
Mch4g1648 836 CDD B3_DNA 113 214 IPR003340 GO:0003677(InterPro)
Mch4g1648 836 Pfam AUX/IAA family 707 797 IPR033389 -
Mch4g1648 836 ProSiteProfiles B3 DNA-binding domain profile. 114 216 IPR003340 GO:0003677(InterPro)
Mch4g1648 836 SMART B3_2 114 216 IPR003340 GO:0003677(InterPro)
Mch4g1648 836 Pfam Auxin response factor 240 322 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch4g1648 836 SUPERFAMILY DNA-binding pseudobarrel domain 98 243 IPR015300 -
Mch4g1648 836 FunFam Auxin response factor 278 350 - -
Mch4g1648 836 ProSiteProfiles PB1 domain profile. 711 796 IPR053793 -
Mch4g1648 836 FunFam Auxin response factor 112 216 - -
Mch4g1648 836 FunFam Auxin response factor 706 800 - -
Mch4g1648 836 Gene3D - 112 216 IPR015300 -
Mch4g1648 836 Gene3D - 707 800 - -
Mch4g1648 836 MobiDBLite consensus disorder prediction 536 559 - -
Mch4g1648 836 Gene3D - 278 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0963 Mch-Chr3:13472960 Mch4g1648 Mch-Chr4:19671306 2.29E-298 dispersed
Mch4g1648 Mch-Chr4:19671306 Mch8g2596 Mch-Chr8:29101355 1.05E-181 dispersed
Mch4g1648 Mch-Chr4:19671306 Mch1g2064 Mch-Chr1:20009579 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43216 PF02309 AUX_IAA 3.70E-08 CL0072 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1648 K14486 - csv:101208098 1580.84