Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1664 ATGTCGCCATCTCTTCCACTTCACTTCTTCCTGTTCACAGTTGCAGCAGCTCTCGCATCTCCCGTAGCCTCCCATTTCTCTTCTTCCACCTCTCCGCCGTCGCCGGAGGCCGCGCCGTCGCTCTCCGAGTGGAGATCTGCTCGAGCTACTTACTACGCCGCCGCCGATCCCCGGGATTCGGTGGGCGGAGCGTGTGGATATGGCGATTTAGTGAAGGCAGGGTATGGCATGGCCACGGTGGGGCTCAGTGAGGCGCTATTCGAACGCGGCCAGATCTGCGGCGCCTGCTTCCAGCTTAGGTGCGTTGAGGACCTCCGCTGGTGTATCCCTGGCACCTCCATCATTGTCACTGTTACTAATTTTTGTGCGCCTAATTATGGCTTCACGGCTGAGGGTGGAGGCCATTGTAACCCTCCTAATAAGCATTTTGTGCTCCCGATTGAAGCGTTTGAGAAGATCGCTATCTGGAAGGCCGGAAACATGCCTGTTCAGTATCGGAGGATCAAGTGCCGGAAAGAGGGGGGAGTTCGATACACGATTTCTGGGTATGGCATCTACCTCTCGGTGTTGATAAGTAATGTTGCAGGCGCTGGAGATGTCAGTGCTGTAAAGATCAAGGGCTCGAGAACCGGTTGGCTCCCGATGGGCCGAAACTGGGGGCAAAACTGGCATATTAATGCTGATTTGAACAATCAAGCCCTCTCCTTTGAAGTGACTAGCAGTGATGGAGTAACAATTACCTCCTACAATGTCGCTCCAAAGAATTGGAACTTTGAGCAGACTTTTGAAGGCAAGCAATTCGAATCTTGA 810 53.33 MSPSLPLHFFLFTVAAALASPVASHFSSSTSPPSPEAAPSLSEWRSARATYYAAADPRDSVGGACGYGDLVKAGYGMATVGLSEALFERGQICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGFTAEGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRIKCRKEGGVRYTISGYGIYLSVLISNVAGAGDVSAVKIKGSRTGWLPMGRNWGQNWHINADLNNQALSFEVTSSDGVTITSYNVAPKNWNFEQTFEGKQFES 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19820837 19825395 - MC04g1179 Mch4g1664 686376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1664 269 PANTHER EXPANSIN-A15 21 267 IPR002963 GO:0009664(InterPro)
Mch4g1664 269 SUPERFAMILY Barwin-like endoglucanases 43 193 IPR036908 -
Mch4g1664 269 PRINTS Expansin/Lol pI family signature 43 58 IPR007118 GO:0005576(InterPro)
Mch4g1664 269 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576(InterPro)
Mch4g1664 269 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576(InterPro)
Mch4g1664 269 PRINTS Expansin/Lol pI family signature 250 264 IPR007118 GO:0005576(InterPro)
Mch4g1664 269 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Mch4g1664 269 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576(InterPro)
Mch4g1664 269 Pfam Lytic transglycolase 80 165 IPR009009 -
Mch4g1664 269 Gene3D - 176 267 IPR036749 -
Mch4g1664 269 PRINTS Expansin signature 150 163 IPR002963 GO:0009664(InterPro)
Mch4g1664 269 PRINTS Expansin signature 250 266 IPR002963 GO:0009664(InterPro)
Mch4g1664 269 PRINTS Expansin signature 133 150 IPR002963 GO:0009664(InterPro)
Mch4g1664 269 PRINTS Expansin signature 221 242 IPR002963 GO:0009664(InterPro)
Mch4g1664 269 PRINTS Expansin signature 101 112 IPR002963 GO:0009664(InterPro)
Mch4g1664 269 PRINTS Expansin signature 186 207 IPR002963 GO:0009664(InterPro)
Mch4g1664 269 PRINTS Expansin signature 74 88 IPR002963 GO:0009664(InterPro)
Mch4g1664 269 PRINTS Expansin signature 114 124 IPR002963 GO:0009664(InterPro)
Mch4g1664 269 PRINTS Expansin signature 174 186 IPR002963 GO:0009664(InterPro)
Mch4g1664 269 Pfam Expansin C-terminal domain 176 253 IPR007117 -
Mch4g1664 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 175 IPR007112 -
Mch4g1664 269 CDD DPBB_EXPA_N 43 170 - -
Mch4g1664 269 SUPERFAMILY PHL pollen allergen 172 264 IPR036749 -
Mch4g1664 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 264 IPR007117 -
Mch4g1664 269 Gene3D - 29 171 IPR036908 -
Mch4g1664 269 SMART dpbb_1 79 165 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1664 Mch-Chr4:19820837 Mch9g1387 Mch-Chr9:16250690 2.09E-92 dispersed
Mch4g1664 Mch-Chr4:19820837 Mch2g0893 Mch-Chr2:6077979 1.45E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1664 - - - 0.0