Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1666 ATGGTTCTCTCCAAGACTGCCTCTCAGACCGACGTCTCCGTCCACTCCACCTTCGCTTCTCGCTATGTCCGCACCTCTCTCCCGAGATTCAAAATGCCGGAAAATTCGATTCCGAAGGAGGCCGCGTACCAGATCATCAACGACGAACTCATGCTCGATGGAAACCCTAGGCTCAACTTGGCCTCCTTTGTCACCACTTGGATGGAGCCTGAGTGCGATAAACTCATCATGGCCGCCATTAACAAGAATTACGTCGATATGGATGAGTATCCTGTCACTACAGAACTCCAGGCACAACGATGTGTGAACATGATAGCACACTTGTTCAATGCCCCACTGGGAGAGTCAGAGACGGCGGTGGGAGTGGGGACTGTGGGATCGTCGGAGGCCATAATGTTGGCTGGTTTGGCTTTCAAGAGAAAGTGGCAGAACAGAATGAAGGCTGAAGGCAAGCCTTGTGACAAGCCCAACATTGTCACTGGAGCTAATGTCCAGGTATGCTGGGAGAAATTTGCAAGGTATTTTGAGGTAGAGCTGAAGGAGGTGAAACTGAGGGAAGGTTACTATGTGATGGACCCAGAGAAAGCTGTGGAGTTGGTCGACGAGAACACCATCTGTGTTGCAGCCATCTTGGGTTCCACCCTCAATGGAGAATTCGAAGACGTTAAGCTCTTAAACGATCTCTTAGTCGAAAAGAACAAGGAAACTGGATGGGACACTCCAATCCATGTTGATGCTGCAAGCGGAGGGTTCATTGCCCCATTCATATACCCTGAGCTGGAGTGGGACTTCAGGCTACCATTAGTAAAGAGCATTAACGTGAGTGGGCACAAATATGGGCTCGTTTATGCTGGAATCGGTTGGGTCATCTGGAGGAACAAAGAAGACTTGCCTGAAGAACTCATCTTCCACATCAACTATCTCGGAGCTGACCAGCCCACTTTCACACTCAATTTCTCAAAGGGTTCCAGCCAAGTGATTGCCCAGTACTACCAATTGATCCGCTTGGGCTATGAGGGATACCAAAACGTGATGGAGAACTGCCGGGAGAACATGATAGTGCTGAAGGAGGGGCTGGAGAGCACAGGGCGGTTCAACATAGTGTCAAAGGACGACGGGGTTCCGCTGGTGGCGTTCTCTCTGAAGGACAACTCGCGGCACACGGAATTCGAGGTGTCGGAGATGCTGAGGAGATTCGGGTGGATCGTGCCGGCGTACACGATGCCGCCGGACGCGCAGCACATAACGGTGCTGAGAGTGGTGATAAGAGAGGACTTTTCTCGAACACTTGCTGAGCGTCTGGTGAAGGACGTGGAGAAAGTGCTGCACGAGCTGGACAGCCTGCCGTCGAGGGCGGACTTCAAGACGACGGTCGCCGGAGAAGAGACGCAGAAGAACGACGTCGTTGTGGCCAAGAAGAGCGCTCTCGAGACGCAGAGGGAGATCACCACGGTTTGGAGGAAGTTCGTCATGGAGAAGAAGAAGACCAATGGAGTTTGCTAG 1503 52.1 MVLSKTASQTDVSVHSTFASRYVRTSLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMAAINKNYVDMDEYPVTTELQAQRCVNMIAHLFNAPLGESETAVGVGTVGSSEAIMLAGLAFKRKWQNRMKAEGKPCDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYQNVMENCRENMIVLKEGLESTGRFNIVSKDDGVPLVAFSLKDNSRHTEFEVSEMLRRFGWIVPAYTMPPDAQHITVLRVVIREDFSRTLAERLVKDVEKVLHELDSLPSRADFKTTVAGEETQKNDVVVAKKSALETQREITTVWRKFVMEKKKTNGVC 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19855907 19863086 + MC04g1181 Mch4g1666 686378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1666 500 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 382 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Mch4g1666 500 FunFam Glutamate decarboxylase 362 449 - -
Mch4g1666 500 NCBIfam glutamate decarboxylase 16 445 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Mch4g1666 500 FunFam Glutamate decarboxylase 66 361 - -
Mch4g1666 500 Gene3D - 1 65 - -
Mch4g1666 500 PANTHER GLUTAMATE DECARBOXYLASE 1 500 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Mch4g1666 500 SUPERFAMILY PLP-dependent transferases 15 445 IPR015424 -
Mch4g1666 500 Gene3D - 66 361 IPR015421 -
Mch4g1666 500 Gene3D - 362 449 - -
Mch4g1666 500 FunFam Glutamate decarboxylase 1 65 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1494 Mch-Chr4:18433438 Mch4g1666 Mch-Chr4:19855907 1.97E-294 dispersed
Mch4g1496 Mch-Chr4:18454034 Mch4g1666 Mch-Chr4:19855907 1.59E-298 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1666 K01580 - csv:101216119 972.615