Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1668 CTTGGCGTCAAGTGCGGCGGCGGGAGGGTCACCGAGCTGCGGCTTCCCGGCGTCGGACTCGTCGGGGAACTTCCGCTAGGGCTTGGAAACCTGACTCAACTTCAAACCCTATCTCTCCGCTCTAATATGCTTTCTGGTTCTCTTCCGTCTGATTTTGCGAACCTCCGCTCCCTCCGCAGCCTCTACTTGCAACGGAACTCATTTTCCGGCGAGATTCCTCAGGTTCTGTTCAGTATCCAGAGTCTGGTTCGCGTGAATTTGGCTCATAACAAGTTCGCCGGTCCAATTTCGTCTAGGTTTAGTAATCTCACGAAATTAGAGGTCCTGAATTTGGAAGGCAATCAACTCACTGGATTTATTCCTGATTTCACCGTTCCCTCGCTTAAGACTCTCAATGTTTCTTTCAACCATCTGAACGGCTCCATCCCTTCGCAGTTTTCCGATCAGCCAGCCAGTGCCTTCGACGGCAACTCGCTTTGCGGGAAGCCGCTGCACCCTTGCGACGGCGAGGACAAGAAATTATCCGGCGGAGCAATCGCCGGTATCGTTATAGGAGCGTTGATTGCATTCCTAATCCTCATTCTCATTTTGTTCTTTTTATGCCGGAAGACGAAGAGAACAACTGGTTCAATGGATGCTACGACGACGACCTCCAGGAGAATGTCCTCGGAGGTTGAGAACCCAGGAAAGAGTGTGTTTGATTTGGAGGAACTGTTGAAAGCATCTGCAGAGGTGTTGGGGAAGGGGACTTTTGGGGCAACTTACAAGGTAGCTCTGGATGTGGGGATGGCTGTGGTGGTTAAGAGGTTGAGAGATGTGAGAGTTCCAGAGGAGGAATTCAGGGAGAAGATTGAAAGCTTGGGGATGATGAATCATCAGAACTTGGTCCCCATTAACGCTTACTATTATGGCAGAGACGAGAAGCTTCTGATATGTGATTATGTCCCCATGGGAAGCTTGTCTGTACTTTTACATGGCAGCAGAGATGCTGGTAAGGCTCCATTGAAATGGGAAGCAAGGGCTGGCATTGCGCGCGCAGCCGCTCGGGGGATTACGTATCTTCATTCTCGACGACCTCCGACCTCCCATGGCAATATAAAGTCCTCAAACATTCTCCTCAACCAATCCCACATAGCTTGTGTCTCTGACTTTGGCCTCACTCAGATTGCAAGCCCCACATCCACTCCGAACCATGTTGCAGCCTACCGGGCCCCTGAAGTCACCGATCCTCAAAAAGTATCCCTGAAAGCAGACGTTTACAGCTTCGGCATGGTAATTCTAGAGCTTATAACAGGGAAGGCTCCAAACTCGCCGATGTTCAATGATGATGGAGTAGACCTCCCGCGATGGGTGCACTCGAAGGTCGAAGAGAAGAAGACAGCTGAAGTGTTTGATGAGAAACTGTTAGGACACAAGAATGGCTTGGATGAAATGGTTCAGCTTCTGCATCTTGCCATGCTGTGTACAGCTCCACACCCCGACAGCCGCCCCTCGATGGCGAAGGTGACGAGTCGAATCGACGAAATATATCACTCGATCTTACTGAAAGAACAAGAGACGGGCATCGATAAGTTTTATGACGTGGACAGTTCTGTTTCCCAGCAATTTTACTCGGCTGATTCAATCATGCTTCCACCTTCAGTATAG 1647 50.09 LGVKCGGGRVTELRLPGVGLVGELPLGLGNLTQLQTLSLRSNMLSGSLPSDFANLRSLRSLYLQRNSFSGEIPQVLFSIQSLVRVNLAHNKFAGPISSRFSNLTKLEVLNLEGNQLTGFIPDFTVPSLKTLNVSFNHLNGSIPSQFSDQPASAFDGNSLCGKPLHPCDGEDKKLSGGAIAGIVIGALIAFLILILILFFLCRKTKRTTGSMDATTTTSRRMSSEVENPGKSVFDLEELLKASAEVLGKGTFGATYKVALDVGMAVVVKRLRDVRVPEEEFREKIESLGMMNHQNLVPINAYYYGRDEKLLICDYVPMGSLSVLLHGSRDAGKAPLKWEARAGIARAAARGITYLHSRRPPTSHGNIKSSNILLNQSHIACVSDFGLTQIASPTSTPNHVAAYRAPEVTDPQKVSLKADVYSFGMVILELITGKAPNSPMFNDDGVDLPRWVHSKVEEKKTAEVFDEKLLGHKNGLDEMVQLLHLAMLCTAPHPDSRPSMAKVTSRIDEIYHSILLKEQETGIDKFYDVDSSVSQQFYSADSIMLPPSV 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 19878595 19880958 + MC04g1183 Mch4g1668 686380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1668 548 SMART LRR_typ_2 103 123 IPR003591 -
Mch4g1668 548 SMART LRR_typ_2 31 54 IPR003591 -
Mch4g1668 548 SMART LRR_typ_2 55 79 IPR003591 -
Mch4g1668 548 SMART LRR_typ_2 125 148 IPR003591 -
Mch4g1668 548 Gene3D Ribonuclease Inhibitor 125 171 IPR032675 -
Mch4g1668 548 ProSiteProfiles Protein kinase domain profile. 240 514 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1668 548 ProSitePatterns Protein kinases ATP-binding region signature. 246 268 IPR017441 GO:0005524(InterPro)
Mch4g1668 548 PANTHER OS05G0588300 PROTEIN 2 512 IPR050994 -
Mch4g1668 548 SUPERFAMILY L domain-like 8 148 - -
Mch4g1668 548 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 6 96 - -
Mch4g1668 548 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 315 519 - -
Mch4g1668 548 Pfam Leucine rich repeat 29 67 IPR001611 GO:0005515(InterPro)
Mch4g1668 548 Gene3D Ribonuclease Inhibitor 1 124 IPR032675 -
Mch4g1668 548 Gene3D Phosphorylase Kinase; domain 1 205 314 - -
Mch4g1668 548 Pfam Protein tyrosine and serine/threonine kinase 244 505 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g1668 548 FunFam pollen receptor-like kinase 1 210 314 - -
Mch4g1668 548 Gene3D Transferase(Phosphotransferase) domain 1 315 518 - -
Mch4g1668 548 SUPERFAMILY Protein kinase-like (PK-like) 244 504 IPR011009 -
Mch4g1668 548 Pfam Leucine Rich Repeat 127 147 IPR001611 GO:0005515(InterPro)
Mch4g1668 548 Pfam Leucine Rich Repeat 105 122 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1668 Mch-Chr4:19878595 Mch8g2297 Mch-Chr8:26130326 1.13E-152 dispersed
Mch4g1668 Mch-Chr4:19878595 Mch3g1575 Mch-Chr3:17751555 6.47E-144 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77342 PF07714 PK_Tyr_Ser-Thr 5.20E-32 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1668 - - - 0.0