Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1687 ATGTTCTTGGGTTCTTTTTTCAAGATCATGAAGATGAAGATGAAGAGGGAGCATGAGGATGGGAGATCTACTGGTGGTGGCGGCGGTAGTGGTAGTGGTAGTGGTAGTGTCTATGGCGGCGGGGTTGTGAAGGCTGAGTGTTCTTCAATGTCGAGTGGGAAGATGAAGATGTGGGAGGAGGAGGAGGACGGCGGCGGCGGGATGGATGAGTTGCTTGCTGTTTTGGGGTACAAGGTTCGTGCATCGGACATGGCGGATGTGGCGCAGAAGCTCGAGCAGCTTGAGATGGTGATGGGAACTGCTCAGGAAGATGGGATTTCTCATCTTTCTTGTGATACTGTTCATTATAATCCTTCTGATCTTTCTGGTTGGGTTCAAAATATGCTCTCTGAATTCAATAATTTCCCCAGCGATTTACAACATCGAGACCCTCTCTGTTTGCACAATTCCAATTCTCACTCCCAGATTCAATCTTCCCCTTCCCGTTTCTACAACGATGATTCTGAGTACGATTTGAGCGCCATTCCTGGCGTTGCGGCTCTGCCTCCCAAACATTCCTCTTCCTCCGCAGGGACCGAAACTAATTCACGGAAGCGATTGAAAACCAGTACCTCCTCGATTGGAGCGTCGTCTTCGCCGCCGTTCGTCGCTACGGCCGGGATTGTCTCTGAGCCTTCTCGACCTGTGGTGGTTGTGGACTCGCAAGAGGCCGGGATTCAGCTTGTTCACACGCTCATGGCCTGCGCCGAAGCGGTCCAGCAGGAGAATATGACGCTCGGCGATGCGTTGGTGAAGCACATCGGGTTGCTGATGGCGTCGCAGGCCGGCGCGATGAGGAAAGTCGCCACGTATTTCGCCGAAGCCCTAGCTCGTCGGATTTACAGAATATACTCTCCTCAAGACGGCCTCTACTCCGATCTCCTCCAGAATCATTTCTACGAGACCTGTCCGTACCTGAAATTCGCGCATTTCACCGCCAATCAGGCCATTCTCGAGGCCTTCGCGACGGCGAACAGAGTCCATGTAATCGATTTCAGTCTCAATCAAGGTATGCAGTGGCCAGTGCTGATGCAGGCGCTCGCATTACGCGTGGGAGGCCCGCCGGAGTTCCGGCTGACCGGAATCGGCCCGCCGCTGTCGGATAACAGCACCGATTCCTTGGAGCAGGTCGGTTGGAAGCTGTCGCGGACGGCGGAAGCCATCGGCGTGAAGTTCAAGTTCAATCATATCGTGTGCAGTAATCTGGAGGATCTGGACCCGGCGGCGTTGGACATCCTTCCGGCGGAGGTGGAGGCGGTGGCGGTGAACTCGGTGTTCGATCTCCACCGCTTATTGGCTCGACCTGGAGCGATCGAGAAGGTTTTGGGATCGATAAAGAGGATGAAGCCGAAGATCGTGACAATTGTGGAGCAGGAAGCGAACCACAACGGGCCGGTTTTCGTGGACCGGTTCACGGAGGCTCTGCATTACTACTCGAATCTGTTTGACTCGCTGGAGGGCTACTCGAACGGGTTCGAACCGGCGAATGAGGACGTGGTGATGTCGGAGTTTTATTTGGGGAGGCAAATATGCAACGTGGTGGCTTGTGAAGGAACGGACCGAGTCGAGCGACACGAGACACTGGCTCAGTGGCGAACTCGGATGGAATCGGCCGGTTTCGACCCGGTTCACATGGGCTCGAACGCGTTCAAGCAGGCCAGTATGCTTCTGGCCCTTTACGCCGGCGGCGAAGGGTACCGGGTGGAGGAGAATAACGGGTGTCTGATGCTGGGTTGGCATACTCGGCCGCTGATCGCCACCTCGGCCTGGCAGCTCGCCGCCGATGATTCTTGGCGAGTCGACTCAGTGGTTCGAGCGAGTGAATGA 1866 55.41 MFLGSFFKIMKMKMKREHEDGRSTGGGGGSGSGSGSVYGGGVVKAECSSMSSGKMKMWEEEEDGGGGMDELLAVLGYKVRASDMADVAQKLEQLEMVMGTAQEDGISHLSCDTVHYNPSDLSGWVQNMLSEFNNFPSDLQHRDPLCLHNSNSHSQIQSSPSRFYNDDSEYDLSAIPGVAALPPKHSSSSAGTETNSRKRLKTSTSSIGASSSPPFVATAGIVSEPSRPVVVVDSQEAGIQLVHTLMACAEAVQQENMTLGDALVKHIGLLMASQAGAMRKVATYFAEALARRIYRIYSPQDGLYSDLLQNHFYETCPYLKFAHFTANQAILEAFATANRVHVIDFSLNQGMQWPVLMQALALRVGGPPEFRLTGIGPPLSDNSTDSLEQVGWKLSRTAEAIGVKFKFNHIVCSNLEDLDPAALDILPAEVEAVAVNSVFDLHRLLARPGAIEKVLGSIKRMKPKIVTIVEQEANHNGPVFVDRFTEALHYYSNLFDSLEGYSNGFEPANEDVVMSEFYLGRQICNVVACEGTDRVERHETLAQWRTRMESAGFDPVHMGSNAFKQASMLLALYAGGEGYRVEENNGCLMLGWHTRPLIATSAWQLAADDSWRVDSVVRASE 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20041674 20044284 + MC04g_new0488 Mch4g1687 686399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1687 621 Coils Coil 84 104 - -
Mch4g1687 621 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 198 603 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Mch4g1687 621 Pfam Transcriptional regulator DELLA protein N terminal 69 136 IPR021914 -
Mch4g1687 621 Gene3D - 67 132 IPR038088 -
Mch4g1687 621 SMART DELLA_2 69 142 - -
Mch4g1687 621 Pfam GRAS domain family 241 604 IPR005202 -
Mch4g1687 621 FunFam DELLA protein GAI 67 132 - -
Mch4g1687 621 MobiDBLite consensus disorder prediction 178 211 - -
Mch4g1687 621 ProSiteProfiles GRAS family profile. 232 604 IPR005202 -
Mch4g1687 621 MobiDBLite consensus disorder prediction 185 211 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1457 Mch-Chr10:14420047 Mch4g1687 Mch-Chr4:20041674 1.61E-55 dispersed
Mch4g1417 Mch-Chr4:17650390 Mch4g1687 Mch-Chr4:20041674 1.25E-231 dispersed
Mch4g1687 Mch-Chr4:20041674 Mch8g2309 Mch-Chr8:26277069 3.52E-244 dispersed
Mch4g1687 Mch-Chr4:20041674 Mch1g1496 Mch-Chr1:16458092 5.83E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43221 PF03514 GRAS 1.30E-131 CL0063 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1687 K14494 - csv:101213911 868.611