Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1691 ATGGCACTCGCAAACTCAGCTGTACAAGAAGTCGATGGCATGAAGACTTTAGCCATGGCAACCCATGAGAATCCAAATAGTAACTCGGTCTTTCGAAACCCGAGTTACCAACTCGATCATCATCATCACCACCAGGGATCTCAATCTCTCATCAACTTCAAGTGTGGGATTGACAATCTTCTCCACAAGAATAATAATAACAACAACGAATCCTTGCTGAGCTTTGAGCCACAAGACACCTTCCATTGGGTTGATCAGCAGCAGCGTTTGATGGACGATCCCAATTGCAGCTTCCAAACAGCTACAAACTACAGCCCTTCAAAAGACAATAATAAAACTGCAGCTGGAGATAATCATAATGATGGCAGCTCAGTGTATGAATGGCTTTATTCTGAACCAACTTCTTCTGTTTCTGATGCCATTCATGAGGCTGAAGCAGCTCAAGAGATAGCCAATCAAAAGCGATCTCTTATGGTAGAGAGCAGTGGGGGTGTTTGTAAGAAGCGATGTACTAGTGCAACAACTAAGAAACAGAAACCCAAATCATCTGCAGCAGCCAAGGATCCACAGAGCATTGCAGCCAAGAATCGACGAGAGAGGATTAGCGAGCGGCTGAAGATACTCCAAGAATTGGTTCCCAATGGCTCCAAGGTTGATTTGGTAACCATGTTGGAGAAAGCAATTAGTTATGTCAAATTTCTTCAGCTACAAGTGAAGATCCTGGCGACGGATGAATTTTGGCCAGTTCAAGGTGGGAAAGTTCCTGATATTTCCCAAGTTAAGGAAGCCATTGATGTCATTCTTTCATCTCAAAGGGAAAGAAGCTCAAGCTCAATCAGTGAAAAGTGA 849 43.58 MALANSAVQEVDGMKTLAMATHENPNSNSVFRNPSYQLDHHHHHQGSQSLINFKCGIDNLLHKNNNNNNESLLSFEPQDTFHWVDQQQRLMDDPNCSFQTATNYSPSKDNNKTAAGDNHNDGSSVYEWLYSEPTSSVSDAIHEAEAAQEIANQKRSLMVESSGGVCKKRCTSATTKKQKPKSSAAAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVQGGKVPDISQVKEAIDVILSSQRERSSSSISEK 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20075627 20077349 - MC04g_new0490 Mch4g1691 686403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1691 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 234 IPR011598 GO:0046983(InterPro)
Mch4g1691 282 Pfam Helix-loop-helix DNA-binding domain 193 235 IPR011598 GO:0046983(InterPro)
Mch4g1691 282 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 29 247 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1691 282 Gene3D - 179 242 IPR036638 GO:0046983(InterPro)
Mch4g1691 282 MobiDBLite consensus disorder prediction 23 43 - -
Mch4g1691 282 CDD bHLH_AtIND_like 186 248 - -
Mch4g1691 282 MobiDBLite consensus disorder prediction 171 196 - -
Mch4g1691 282 MobiDBLite consensus disorder prediction 94 120 - -
Mch4g1691 282 FunFam Transcription factor bHLH83 183 242 - -
Mch4g1691 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 243 IPR036638 GO:0046983(InterPro)
Mch4g1691 282 SMART finulus 191 240 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0448 Mch-Chr10:2938142 Mch4g1691 Mch-Chr4:20075627 1.42E-06 dispersed
Mch11g0358 Mch-Chr11:2200117 Mch4g1691 Mch-Chr4:20075627 4.90E-22 dispersed
Mch4g1691 Mch-Chr4:20075627 Mch6g0634 Mch-Chr6:4333488 2.27E-14 dispersed
Mch4g1691 Mch-Chr4:20075627 Mch8g0636 Mch-Chr8:4576611 1.15E-21 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43222 PF00010 HLH 8.90E-08 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1691 - - - 0.0