Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g1704 | ATGGCCGGAATCGGCGGAAGAGATGAGGACGGAAGAAACCGCCGGCCGGATTCCGATGAGGATCAGGATTTCAAGATGGAGAGCGTCCGCGAGCGGATCATTTCGTCGCGAACGAGCCGATTCAATCTGATTCAGAAACAGTTGAGGCTCGAGTCGAATCGCAGAAGATTTAGCCGCGAAAACCTCATCAATGGCATCAAGTGCCTCGTTATCCGCCCTGACAGCAGGTGGTACAGGGCGTGGACGAAGTTCATACTGATATGGGCAATCTACTCATCCTTCTTCACTCCCATGGAATTCGGGTTCTTCAGGGGATTACCCGAGAATCTATTTATACTCGACATTGTGGGACAACTTGCTTTCCTCCTCGACATTGTTTTCCACTTCTTTCTTGCCTACCGAGACAGTCAGACTTACCGAATGGTCTACAAGCGCACCCCAATAGTCCTCAGGTACTTGAAATCCACTTTTGTGACTGATTTGCTCAGCTGTATGCCCTGGGATATCATTTACAAGGCTTGTGGGAGAAGAGAGGAGGTGAGATACCTCCTATGGATAAGGCTATTTCGGGTGCGGAAAGTCACTGATTTTTTTCAGACGTTGGAGAAGGATATACGTATAAATTATATGTTCACTAGAATTGTCAAGCTCCTTGTTGTTGAACTTTACTGCACACACACTGCAGCCTGCATCTTTTACTACTTAGCAACTACTCTTCCTCCTTCTGAAGAAGGGTACACGTGGATCGGAAGCTTAAAACTAGGGGACTACAGTTACTCAGATTTCAGAGATATCGATTTATGGAAACGCTACACCACATCTTTGTATTTTGCCATTGTCACCATGGCCACTGTTGGTTATGGAGATATACATGCAGTCAACTTGAGGGAAATGATATTCGTGATGATTTATGTGTCACTTGACATGGTTCTCGGTGCTTATTTGATCGGTAACATGACTGCATTGATCGTTAAAGGATCTAAGACAGTGAAATTCAGGGATAAAATGGCAGATGTAATGAAGTACATGAACAGAAATAGACTTAGCAGGGATATCCGTGATCAGATCAAAGGTCACTTACGTTTACAGTATGAAAGTAGTTACACTGAGGCTTCTGTTCTTCGGGACATCCCGATATCAATCCGTTCTAAGATTTCCCAAACATTATACTTGCCTTATATTGAGAATGTTCCTCTCTTTAAAGGATGCTCTCCAGAGTTCATCAATCAAATAGTTATTAGACTCCATGAAGAGTTTTTTCTCCCTGGAGAGGTGATAATGGAGCAAGGAAACGTAGTTGATCAACTTTATTTTGTCTGTCATGGTGCGCTGGAGGAAGTGGGCATAGGACAAGATGGTTCAGAAGATATCGTATCTTTACTGCAGCCCAACAGCTCTTTTGGACAGATTTCAATTCTTTGCAATATTCCTCAACCTTATACAGTTCGAGTATGTGAACTGTGCAGGCTCTTGCGCCTTGATAAGCAGTCGTTTACAAATATCCTTGACATATACTTTTACGACGGGAGGAAAATCTTGAACAACCTTCTACAGGGTAAAGACTCCGACCTTGGAATTAAGCAATTGGAGTCGGATATCACATTTCATATTGGTAAGCAAGAAGCTGAACTTGCTCTCAAGGTGAACAGTGCAGCATATCATGGAGATATGTACCAATTAAAAGGTCTCGTCCGAGTGGGAGCTGATCCAAACAAGACGGATTATGATGGAAGGTCGCCTTTGCATCTTGCAGCAGCCAGAGGATTCGATGATATAGTTCTTTTCTTAATTCAGGAAGGAGTAAACATTGACCTCAAAGATAATTTTGGAAATACACCATTAATGGAAGCCATCAAGAACGGGAACGATCAAGTTGCTGCTTCGCTCGCTAAACAAGGTGCCTCATTGAAGGTTGAGAATCCTGGTAGCTTCCTCTGCACAGCTGTTGCTAGGGGTGATTCAGATCTTCTTAAGAGATCATTGTGCTATGGCATTGACCCCAACTCCAAAGATTACGATTCCCGAACTCCACTTCATATAGCTGCCTCAGAAGGGCTACATTTGATGGCAAAGTTGCTAATAGAATTTGGAGCTAATGTTTTCTCAAAGGACAGATGGGGAAACACTCCCCTTGATGAAGGCCGAATTAGTGGAAACAAGAATTTGATCAAGCTCTTGGAAGAGGCAAAAGCTACTCAGTTGTCAGAATCTCCTTATTCCCCTCGAGAATTCACAGACAAAAAACACTCAAAGAAATGTACAGTGTTCCCCTTCCACCCATGGGATTCCGAAGAACACAGAAAACCTGGAATTGTGCTATGGGTTCCACACACTATTGAAGAGCTCATCAAAGAATCATCAGAGCAGCTACAAGTTTCAAGTAAATGTTGTATATTATCAGAAGATGGAGGTAAAATTCTTGATGTCCATATGATTGATGAATCTCAAAAATTGTATCTAGTTGCTGAAACTCATTAA | 2478 | 42.74 | MAGIGGRDEDGRNRRPDSDEDQDFKMESVRERIISSRTSRFNLIQKQLRLESNRRRFSRENLINGIKCLVIRPDSRWYRAWTKFILIWAIYSSFFTPMEFGFFRGLPENLFILDIVGQLAFLLDIVFHFFLAYRDSQTYRMVYKRTPIVLRYLKSTFVTDLLSCMPWDIIYKACGRREEVRYLLWIRLFRVRKVTDFFQTLEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPPSEEGYTWIGSLKLGDYSYSDFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFVMIYVSLDMVLGAYLIGNMTALIVKGSKTVKFRDKMADVMKYMNRNRLSRDIRDQIKGHLRLQYESSYTEASVLRDIPISIRSKISQTLYLPYIENVPLFKGCSPEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGALEEVGIGQDGSEDIVSLLQPNSSFGQISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLQGKDSDLGIKQLESDITFHIGKQEAELALKVNSAAYHGDMYQLKGLVRVGADPNKTDYDGRSPLHLAAARGFDDIVLFLIQEGVNIDLKDNFGNTPLMEAIKNGNDQVAASLAKQGASLKVENPGSFLCTAVARGDSDLLKRSLCYGIDPNSKDYDSRTPLHIAASEGLHLMAKLLIEFGANVFSKDRWGNTPLDEGRISGNKNLIKLLEEAKATQLSESPYSPREFTDKKHSKKCTVFPFHPWDSEEHRKPGIVLWVPHTIEELIKESSEQLQVSSKCCILSEDGGKILDVHMIDESQKLYLVAETH | 825 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 20195295 | 20205748 | + | MC04g1211 | Mch4g1704 | 686416 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g1704 | 825 | SMART | ANK_2a | 673 | 702 | IPR002110 | GO:0005515(InterPro) | |
| Mch4g1704 | 825 | SMART | ANK_2a | 706 | 735 | IPR002110 | GO:0005515(InterPro) | |
| Mch4g1704 | 825 | SMART | ANK_2a | 576 | 605 | IPR002110 | GO:0005515(InterPro) | |
| Mch4g1704 | 825 | SMART | ANK_2a | 609 | 638 | IPR002110 | GO:0005515(InterPro) | |
| Mch4g1704 | 825 | SUPERFAMILY | cAMP-binding domain-like | 327 | 518 | IPR018490 | - | |
| Mch4g1704 | 825 | Pfam | Ankyrin repeats (3 copies) | 645 | 727 | IPR002110 | GO:0005515(InterPro) | |
| Mch4g1704 | 825 | Pfam | Ankyrin repeats (3 copies) | 551 | 639 | IPR002110 | GO:0005515(InterPro) | |
| Mch4g1704 | 825 | ProSiteProfiles | Ankyrin repeat region circular profile. | 673 | 705 | - | - | |
| Mch4g1704 | 825 | FunFam | Potassium channel KAT2 | 387 | 523 | - | - | |
| Mch4g1704 | 825 | Pfam | KHA, dimerisation domain of potassium ion channel | 751 | 820 | IPR021789 | - | |
| Mch4g1704 | 825 | SUPERFAMILY | Ankyrin repeat | 549 | 728 | IPR036770 | - | |
| Mch4g1704 | 825 | ProSiteProfiles | KHA domain profile. | 752 | 825 | IPR021789 | - | |
| Mch4g1704 | 825 | SUPERFAMILY | Voltage-gated potassium channels | 73 | 324 | - | - | |
| Mch4g1704 | 825 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 399 | 519 | IPR000595 | - | |
| Mch4g1704 | 825 | ProSiteProfiles | Ankyrin repeat profile. | 673 | 705 | IPR002110 | GO:0005515(InterPro) | |
| Mch4g1704 | 825 | PRINTS | EAG/ELK/ERG potassium channel family signature | 223 | 233 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Mch4g1704 | 825 | PRINTS | EAG/ELK/ERG potassium channel family signature | 114 | 124 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Mch4g1704 | 825 | PRINTS | EAG/ELK/ERG potassium channel family signature | 271 | 288 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Mch4g1704 | 825 | PRINTS | EAG/ELK/ERG potassium channel family signature | 315 | 324 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| Mch4g1704 | 825 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Mch4g1704 | 825 | Gene3D | Helix hairpin bin | 326 | 382 | - | - | |
| Mch4g1704 | 825 | MobiDBLite | consensus disorder prediction | 7 | 25 | - | - | |
| Mch4g1704 | 825 | CDD | CAP_ED | 399 | 513 | IPR000595 | - | |
| Mch4g1704 | 825 | Pfam | Ion transport protein | 78 | 326 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Mch4g1704 | 825 | Gene3D | - | 534 | 641 | IPR036770 | - | |
| Mch4g1704 | 825 | Gene3D | Jelly Rolls | 383 | 520 | IPR014710 | - | |
| Mch4g1704 | 825 | FunFam | Potassium channel SKOR | 79 | 324 | - | - | |
| Mch4g1704 | 825 | Gene3D | - | 642 | 737 | IPR036770 | - | |
| Mch4g1704 | 825 | PRINTS | Ankyrin repeat signature | 689 | 703 | IPR002110 | GO:0005515(InterPro) | |
| Mch4g1704 | 825 | PRINTS | Ankyrin repeat signature | 577 | 592 | IPR002110 | GO:0005515(InterPro) | |
| Mch4g1704 | 825 | Pfam | Cyclic nucleotide-binding domain | 419 | 503 | IPR000595 | - | |
| Mch4g1704 | 825 | ProSiteProfiles | Ankyrin repeat profile. | 609 | 641 | IPR002110 | GO:0005515(InterPro) | |
| Mch4g1704 | 825 | SMART | cnmp_10 | 399 | 517 | IPR000595 | - | |
| Mch4g1704 | 825 | Gene3D | - | 81 | 325 | - | - | |
| Mch4g1704 | 825 | ProSiteProfiles | Ankyrin repeat region circular profile. | 576 | 608 | - | - | |
| Mch4g1704 | 825 | ProSiteProfiles | Ankyrin repeat profile. | 576 | 608 | IPR002110 | GO:0005515(InterPro) | |
| Mch4g1704 | 825 | ProSiteProfiles | Ankyrin repeat region circular profile. | 609 | 640 | - | - | |
| Mch4g1704 | 825 | PANTHER | POTASSIUM CHANNEL AKT1 | 38 | 820 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch4g1704 | Mch-Chr4:20195295 | Mch6g0758 | Mch-Chr6:5208408 | 1.18E-96 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch4g1704 | K21867 | - | csv:101210912 | 1481.85 |