Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1704 ATGGCCGGAATCGGCGGAAGAGATGAGGACGGAAGAAACCGCCGGCCGGATTCCGATGAGGATCAGGATTTCAAGATGGAGAGCGTCCGCGAGCGGATCATTTCGTCGCGAACGAGCCGATTCAATCTGATTCAGAAACAGTTGAGGCTCGAGTCGAATCGCAGAAGATTTAGCCGCGAAAACCTCATCAATGGCATCAAGTGCCTCGTTATCCGCCCTGACAGCAGGTGGTACAGGGCGTGGACGAAGTTCATACTGATATGGGCAATCTACTCATCCTTCTTCACTCCCATGGAATTCGGGTTCTTCAGGGGATTACCCGAGAATCTATTTATACTCGACATTGTGGGACAACTTGCTTTCCTCCTCGACATTGTTTTCCACTTCTTTCTTGCCTACCGAGACAGTCAGACTTACCGAATGGTCTACAAGCGCACCCCAATAGTCCTCAGGTACTTGAAATCCACTTTTGTGACTGATTTGCTCAGCTGTATGCCCTGGGATATCATTTACAAGGCTTGTGGGAGAAGAGAGGAGGTGAGATACCTCCTATGGATAAGGCTATTTCGGGTGCGGAAAGTCACTGATTTTTTTCAGACGTTGGAGAAGGATATACGTATAAATTATATGTTCACTAGAATTGTCAAGCTCCTTGTTGTTGAACTTTACTGCACACACACTGCAGCCTGCATCTTTTACTACTTAGCAACTACTCTTCCTCCTTCTGAAGAAGGGTACACGTGGATCGGAAGCTTAAAACTAGGGGACTACAGTTACTCAGATTTCAGAGATATCGATTTATGGAAACGCTACACCACATCTTTGTATTTTGCCATTGTCACCATGGCCACTGTTGGTTATGGAGATATACATGCAGTCAACTTGAGGGAAATGATATTCGTGATGATTTATGTGTCACTTGACATGGTTCTCGGTGCTTATTTGATCGGTAACATGACTGCATTGATCGTTAAAGGATCTAAGACAGTGAAATTCAGGGATAAAATGGCAGATGTAATGAAGTACATGAACAGAAATAGACTTAGCAGGGATATCCGTGATCAGATCAAAGGTCACTTACGTTTACAGTATGAAAGTAGTTACACTGAGGCTTCTGTTCTTCGGGACATCCCGATATCAATCCGTTCTAAGATTTCCCAAACATTATACTTGCCTTATATTGAGAATGTTCCTCTCTTTAAAGGATGCTCTCCAGAGTTCATCAATCAAATAGTTATTAGACTCCATGAAGAGTTTTTTCTCCCTGGAGAGGTGATAATGGAGCAAGGAAACGTAGTTGATCAACTTTATTTTGTCTGTCATGGTGCGCTGGAGGAAGTGGGCATAGGACAAGATGGTTCAGAAGATATCGTATCTTTACTGCAGCCCAACAGCTCTTTTGGACAGATTTCAATTCTTTGCAATATTCCTCAACCTTATACAGTTCGAGTATGTGAACTGTGCAGGCTCTTGCGCCTTGATAAGCAGTCGTTTACAAATATCCTTGACATATACTTTTACGACGGGAGGAAAATCTTGAACAACCTTCTACAGGGTAAAGACTCCGACCTTGGAATTAAGCAATTGGAGTCGGATATCACATTTCATATTGGTAAGCAAGAAGCTGAACTTGCTCTCAAGGTGAACAGTGCAGCATATCATGGAGATATGTACCAATTAAAAGGTCTCGTCCGAGTGGGAGCTGATCCAAACAAGACGGATTATGATGGAAGGTCGCCTTTGCATCTTGCAGCAGCCAGAGGATTCGATGATATAGTTCTTTTCTTAATTCAGGAAGGAGTAAACATTGACCTCAAAGATAATTTTGGAAATACACCATTAATGGAAGCCATCAAGAACGGGAACGATCAAGTTGCTGCTTCGCTCGCTAAACAAGGTGCCTCATTGAAGGTTGAGAATCCTGGTAGCTTCCTCTGCACAGCTGTTGCTAGGGGTGATTCAGATCTTCTTAAGAGATCATTGTGCTATGGCATTGACCCCAACTCCAAAGATTACGATTCCCGAACTCCACTTCATATAGCTGCCTCAGAAGGGCTACATTTGATGGCAAAGTTGCTAATAGAATTTGGAGCTAATGTTTTCTCAAAGGACAGATGGGGAAACACTCCCCTTGATGAAGGCCGAATTAGTGGAAACAAGAATTTGATCAAGCTCTTGGAAGAGGCAAAAGCTACTCAGTTGTCAGAATCTCCTTATTCCCCTCGAGAATTCACAGACAAAAAACACTCAAAGAAATGTACAGTGTTCCCCTTCCACCCATGGGATTCCGAAGAACACAGAAAACCTGGAATTGTGCTATGGGTTCCACACACTATTGAAGAGCTCATCAAAGAATCATCAGAGCAGCTACAAGTTTCAAGTAAATGTTGTATATTATCAGAAGATGGAGGTAAAATTCTTGATGTCCATATGATTGATGAATCTCAAAAATTGTATCTAGTTGCTGAAACTCATTAA 2478 42.74 MAGIGGRDEDGRNRRPDSDEDQDFKMESVRERIISSRTSRFNLIQKQLRLESNRRRFSRENLINGIKCLVIRPDSRWYRAWTKFILIWAIYSSFFTPMEFGFFRGLPENLFILDIVGQLAFLLDIVFHFFLAYRDSQTYRMVYKRTPIVLRYLKSTFVTDLLSCMPWDIIYKACGRREEVRYLLWIRLFRVRKVTDFFQTLEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPPSEEGYTWIGSLKLGDYSYSDFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFVMIYVSLDMVLGAYLIGNMTALIVKGSKTVKFRDKMADVMKYMNRNRLSRDIRDQIKGHLRLQYESSYTEASVLRDIPISIRSKISQTLYLPYIENVPLFKGCSPEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGALEEVGIGQDGSEDIVSLLQPNSSFGQISILCNIPQPYTVRVCELCRLLRLDKQSFTNILDIYFYDGRKILNNLLQGKDSDLGIKQLESDITFHIGKQEAELALKVNSAAYHGDMYQLKGLVRVGADPNKTDYDGRSPLHLAAARGFDDIVLFLIQEGVNIDLKDNFGNTPLMEAIKNGNDQVAASLAKQGASLKVENPGSFLCTAVARGDSDLLKRSLCYGIDPNSKDYDSRTPLHIAASEGLHLMAKLLIEFGANVFSKDRWGNTPLDEGRISGNKNLIKLLEEAKATQLSESPYSPREFTDKKHSKKCTVFPFHPWDSEEHRKPGIVLWVPHTIEELIKESSEQLQVSSKCCILSEDGGKILDVHMIDESQKLYLVAETH 825
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 20195295 20205748 + MC04g1211 Mch4g1704 686416
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1704 825 SMART ANK_2a 673 702 IPR002110 GO:0005515(InterPro)
Mch4g1704 825 SMART ANK_2a 706 735 IPR002110 GO:0005515(InterPro)
Mch4g1704 825 SMART ANK_2a 576 605 IPR002110 GO:0005515(InterPro)
Mch4g1704 825 SMART ANK_2a 609 638 IPR002110 GO:0005515(InterPro)
Mch4g1704 825 SUPERFAMILY cAMP-binding domain-like 327 518 IPR018490 -
Mch4g1704 825 Pfam Ankyrin repeats (3 copies) 645 727 IPR002110 GO:0005515(InterPro)
Mch4g1704 825 Pfam Ankyrin repeats (3 copies) 551 639 IPR002110 GO:0005515(InterPro)
Mch4g1704 825 ProSiteProfiles Ankyrin repeat region circular profile. 673 705 - -
Mch4g1704 825 FunFam Potassium channel KAT2 387 523 - -
Mch4g1704 825 Pfam KHA, dimerisation domain of potassium ion channel 751 820 IPR021789 -
Mch4g1704 825 SUPERFAMILY Ankyrin repeat 549 728 IPR036770 -
Mch4g1704 825 ProSiteProfiles KHA domain profile. 752 825 IPR021789 -
Mch4g1704 825 SUPERFAMILY Voltage-gated potassium channels 73 324 - -
Mch4g1704 825 ProSiteProfiles cAMP/cGMP binding motif profile. 399 519 IPR000595 -
Mch4g1704 825 ProSiteProfiles Ankyrin repeat profile. 673 705 IPR002110 GO:0005515(InterPro)
Mch4g1704 825 PRINTS EAG/ELK/ERG potassium channel family signature 223 233 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch4g1704 825 PRINTS EAG/ELK/ERG potassium channel family signature 114 124 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch4g1704 825 PRINTS EAG/ELK/ERG potassium channel family signature 271 288 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch4g1704 825 PRINTS EAG/ELK/ERG potassium channel family signature 315 324 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch4g1704 825 MobiDBLite consensus disorder prediction 1 25 - -
Mch4g1704 825 Gene3D Helix hairpin bin 326 382 - -
Mch4g1704 825 MobiDBLite consensus disorder prediction 7 25 - -
Mch4g1704 825 CDD CAP_ED 399 513 IPR000595 -
Mch4g1704 825 Pfam Ion transport protein 78 326 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g1704 825 Gene3D - 534 641 IPR036770 -
Mch4g1704 825 Gene3D Jelly Rolls 383 520 IPR014710 -
Mch4g1704 825 FunFam Potassium channel SKOR 79 324 - -
Mch4g1704 825 Gene3D - 642 737 IPR036770 -
Mch4g1704 825 PRINTS Ankyrin repeat signature 689 703 IPR002110 GO:0005515(InterPro)
Mch4g1704 825 PRINTS Ankyrin repeat signature 577 592 IPR002110 GO:0005515(InterPro)
Mch4g1704 825 Pfam Cyclic nucleotide-binding domain 419 503 IPR000595 -
Mch4g1704 825 ProSiteProfiles Ankyrin repeat profile. 609 641 IPR002110 GO:0005515(InterPro)
Mch4g1704 825 SMART cnmp_10 399 517 IPR000595 -
Mch4g1704 825 Gene3D - 81 325 - -
Mch4g1704 825 ProSiteProfiles Ankyrin repeat region circular profile. 576 608 - -
Mch4g1704 825 ProSiteProfiles Ankyrin repeat profile. 576 608 IPR002110 GO:0005515(InterPro)
Mch4g1704 825 ProSiteProfiles Ankyrin repeat region circular profile. 609 640 - -
Mch4g1704 825 PANTHER POTASSIUM CHANNEL AKT1 38 820 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1704 Mch-Chr4:20195295 Mch6g0758 Mch-Chr6:5208408 1.18E-96 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1704 K21867 - csv:101210912 1481.85