Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1743 ATGGCATCTGCCATGGCCAAAGCAGCGAAAACGCAGAGAAAGCTTACCAGACAGACCCAAGAAAACCAGAAACCGAAGCAGCAGAAGGCAGAGAGGCCGCCGTCTTGGGCAGTTGTTAGAGGCATATTCAGCTGCAAGTACCTGCAGCCCCAACAGCAACCAGAAAAACAACAACAACATCAATTGCCACGAAAAGAGAAGCAACAGGAGCAAGCGACAGAAGAGAGTACCAAAAACTGTAAGAAAATGAGGTGTTCGGGTTCGCTCTGTAGCAACACCAAGGTAACTCACAGGCTTGAAGCAGCACCATCGCCGGAAGTTCACAAGAAAAGGGCATTAACTTCAGTGGGTTCCAGAAACAACGATTCCTCAAGTTCATGTAGATCCACAAAAGCTCCTCCTTTGAACGAACAAAATGGTGTCTTATCAGCCACATGTTCATCGTTATCCGCATCATCTTCTTCCAATTCCTCCAATGGTGCTTCTTTCAGGGGAATGCCTTTCAGGAGGTTCTATGGCTGTTATGAATGTAAAATGGTGATTGACCCTGTTCTTGGGATGACCAGAGATCCTTCTCTTAGAGCAACCATTTGCCCCTGTCCCGAATGTGGTGAGATTTTCATGAAAGCTGAAACTTTGGAGCTTCACCAGAGTGTTAGACATGCAGTATCTGAACTTGGTCCTGAAGACACGAGCAAGAACATAGTGGAAATCATATTCCAGTCAAGCTGGCTGAAAAAGCAAACCCCAATTTGCAAAATTGAGAGGATTCTCAAAGTCCAGAACACTCCAAAGACCATCTCGAAATTCGAGGAATACAGAGACTCCATTAAAGCCAAAGCCACCAAGCTTCCAAAGAAGCACCCACGTTGCATAGCAGATGGTAATGAACTCCTCAGGTTCCACTGCACCACCTTGGCCTGCTCACTTGGCCTAAATGGCTCCTCCAACCTCTGCAATTCAATTCCACAATGCAATGTCTGTAGTATAATCAAGAATGGGTTCAAGGTGGCCGGAGAGGCCGCCGAAAAGGGCATTCTAACGACGGCAACAAGCGGAAAGGCTCACGACAGTGCCGGAATATCATCGGACAGCAATGACAAACGGGCGATGCTGGTTTGCCGGGTAATAGCTGGCAGGGTGAAGAAGAGTTTGGAAGGTAGCATGGAGGATTATGACTCATTGGCTGGAGCAGCAGGGATGTATTCCAATTTGGATGAGTTATATGTGTTCAGTCCCAAGGCAATATTGCCTTGTTTTGTTGTCATTTACGGAGGGTTT 1281 46.92 MASAMAKAAKTQRKLTRQTQENQKPKQQKAERPPSWAVVRGIFSCKYLQPQQQPEKQQQHQLPRKEKQQEQATEESTKNCKKMRCSGSLCSNTKVTHRLEAAPSPEVHKKRALTSVGSRNNDSSSSCRSTKAPPLNEQNGVLSATCSSLSASSSSNSSNGASFRGMPFRRFYGCYECKMVIDPVLGMTRDPSLRATICPCPECGEIFMKAETLELHQSVRHAVSELGPEDTSKNIVEIIFQSSWLKKQTPICKIERILKVQNTPKTISKFEEYRDSIKAKATKLPKKHPRCIADGNELLRFHCTTLACSLGLNGSSNLCNSIPQCNVCSIIKNGFKVAGEAAEKGILTTATSGKAHDSAGISSDSNDKRAMLVCRVIAGRVKKSLEGSMEDYDSLAGAAGMYSNLDELYVFSPKAILPCFVVIYGGF 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20524939 20526311 + MC04g1243 Mch4g1743 686455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1743 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 226 IPR013087 -
Mch4g1743 427 MobiDBLite consensus disorder prediction 1 36 - -
Mch4g1743 427 MobiDBLite consensus disorder prediction 101 115 - -
Mch4g1743 427 MobiDBLite consensus disorder prediction 59 78 - -
Mch4g1743 427 SUPERFAMILY ADP-ribosylation 223 425 - -
Mch4g1743 427 MobiDBLite consensus disorder prediction 116 138 - -
Mch4g1743 427 Gene3D - 222 425 - -
Mch4g1743 427 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 35 424 - -
Mch4g1743 427 MobiDBLite consensus disorder prediction 48 78 - -
Mch4g1743 427 Coils Coil 1 21 - -
Mch4g1743 427 MobiDBLite consensus disorder prediction 101 138 - -
Mch4g1743 427 ProSitePatterns Zinc finger C2H2 type domain signature. 198 221 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0123 Mch-Chr11:781635 Mch4g1743 Mch-Chr4:20524939 5.55E-105 dispersed
Mch11g1146 Mch-Chr11:8049517 Mch4g1743 Mch-Chr4:20524939 3.14E-70 dispersed
Mch1g1800 Mch-Chr1:18223991 Mch4g1743 Mch-Chr4:20524939 1.43E-52 dispersed
Mch2g0853 Mch-Chr2:5831169 Mch4g1743 Mch-Chr4:20524939 3.79E-61 dispersed
Mch4g1743 Mch-Chr4:20524939 Mch6g1767 Mch-Chr6:20196069 6.51E-30 dispersed
Mch4g1743 Mch-Chr4:20524939 Mch10g1143 Mch-Chr10:8567434 1.13E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43224 None None None None Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1743 - - - 0.0