Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1766 ATGGCAGATCAAGTGCCGGGTTGTGCCTGTAGAGCTCTGGGTTTCTTTTTGTTTGTTATTTCAACTTCGATTCTGGCCAATGTAGCTTTTATTAGCGCTAAATCAACTATAGAGCCGTGCTCTAACTCCGATTCTTGTAATGCCCTGCTCGGCTACACTCTCTACACTGACCTCAAGGTTTCTGAGGTGGCTTCGCTCTTTCAAATCGACCCCATTTCGATTCTTACCGCCAATGCCATAGATGTTTCATACCCAGATGTCGAAAACCACATTCTTCCTTCGCAGCTCTTCATCAAAATCCCCATTTCCTGTTCTTGCGTCGATGGGATTCGTAAATCGGTGGCGACTCGGTACAAGACTCGCCCGTCTGACACTCTCTCGTCGATTGCCGATTCAATCTACGGCGGTTTGGTCTCGTCGGATCAGATTCGGGAGGCCAATTCCATTTCTGACCCCTCTGGTCTTGATGTAGGACAGACCCTTGTCGTGCCACTTCCTTGTACTTGCTTCAATGGGACAGACAATTCGTTGCCTGCCATTTACTTGTCTTACGTTGTCATCCCCGAAGATACTTTAGCTGGGATTGCGTCGAGATATTCGACCACTATCACTGACTTGATGGATGTGAATGCCATGGGAAACCCGGCGATTAAGCCTGGTGATATTTTGGCCGTCCCCTTGCCTGCTTGTGCATCGAAGTTTCCAAGATATGCCTCCGACTTTGGTTTGATTGTGCCCAATGGGAGCTATGCGATAACGGCGAGTCACTGTGTGCAGTGTAGTTGTGGGCCGGGAAACCTCAATATGTACTGCATGCCCGCTCCATTTGCGGTTTCTTGTTCGAGTATGCAATGCAGAAACAGCAACCTTATGCTTGGAAACTCCACTGCACAGCAGAGTAGTGCAGGTTGCAATGTTACATCTTGTAGTTATGGTGGTTTTGTGAATGGCACGATCCTTACGACGTTGTCTTCAGGTCTTCAGCCCCGATGCCCAGGGCCACAGCAATTCCCCCCGCTTAAAGCCCCACCTTCTACAGTAATCAGAGATTCAAATTTTGGACCTGCCCCTGCTCCTCAATTTGATGGTGCGGGATCAGCTGCGCCCAGCTCGGGATTGATCCCTTCAACAACAGGATCTCTCCCTGGACTTCCACCAGCCAACAGCCCCATTGGTACTACTTTTGGGTCGAGTTCGGCACCTTCCAGTGCTTCCTCATTGATGAATCCGTTAGCTAGTATCTCTGCTGCCTTTCTTTTATTTATCCTTGCCAACTTTTTAACATCATTTTCATTGTAA 1299 48.58 MADQVPGCACRALGFFLFVISTSILANVAFISAKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPISILTANAIDVSYPDVENHILPSQLFIKIPISCSCVDGIRKSVATRYKTRPSDTLSSIADSIYGGLVSSDQIREANSISDPSGLDVGQTLVVPLPCTCFNGTDNSLPAIYLSYVVIPEDTLAGIASRYSTTITDLMDVNAMGNPAIKPGDILAVPLPACASKFPRYASDFGLIVPNGSYAITASHCVQCSCGPGNLNMYCMPAPFAVSCSSMQCRNSNLMLGNSTAQQSSAGCNVTSCSYGGFVNGTILTTLSSGLQPRCPGPQQFPPLKAPPSTVIRDSNFGPAPAPQFDGAGSAAPSSGLIPSTTGSLPGLPPANSPIGTTFGSSSAPSSASSLMNPLASISAAFLLFILANFLTSFSL 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20652699 20655609 - MC04g1265 Mch4g1766 686478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1766 432 SMART LysM_2 183 226 IPR018392 -
Mch4g1766 432 SMART LysM_2 117 164 IPR018392 -
Mch4g1766 432 Pfam LysM domain 184 226 IPR018392 -
Mch4g1766 432 Pfam LysM domain 118 164 IPR018392 -
Mch4g1766 432 SUPERFAMILY LysM domain 182 227 IPR036779 -
Mch4g1766 432 ProSiteProfiles LysM domain profile. 182 225 IPR018392 -
Mch4g1766 432 ProSiteProfiles LysM domain profile. 116 163 IPR018392 -
Mch4g1766 432 MobiDBLite consensus disorder prediction 332 395 - -
Mch4g1766 432 Gene3D LysM domain 112 173 IPR036779 -
Mch4g1766 432 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 18 333 - -
Mch4g1766 432 CDD LysM 183 225 IPR018392 -
Mch4g1766 432 Gene3D LysM domain 182 226 IPR036779 -
Mch4g1766 432 MobiDBLite consensus disorder prediction 370 384 - -
Mch4g1766 432 CDD LysM 116 163 IPR018392 -
Mch4g1766 432 SUPERFAMILY LysM domain 116 165 IPR036779 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1766 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch4g1766 . 16 392 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 73.7 3.9e-158 554.7
Mch4g1766 . 17 393 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 65.1 3.9e-137 485.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007180 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 37