Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1793 CAGAAACCTGGGTGGAGAAAGTTTCTGTCACATGTCGGCCCTGGATTCCTCGTCTCATTGGCTTACCTTGATCCTGGCAACTTGGAAACTGACCTGCAAGCTGGTGCTAGCCACGGATACGAGCTTCTATGGGTCGTGCTTATCGGATTAATATTTGCACTCATAATCCAATCGCTGGCTGCAAATCTCGGCGTAAGCACCGGAAAACACCTTTCAGAAGTCTGCAAGGCCGAGTACCCAAAAATTGTGAAGTACTGCCTTTGGCTGCTGGCTGAAGTTGCTGTAATAGCCGCCGATATTCCAGAAGTGGTAGGAACGGCCTTTGCCCTGAATATACTATTCCATATCCCAGTTTGGGCTGGAGTTCTCCTCACTGGTTTAAGCACCCTCTTGCTCCTTGGACTCCAGAGATATGGGGCGAGGAAGCTAGAACTGCTGATAGCAATTCTAGTGTTCGTAATGGCGGCGTGCTTCTTCGGGGAAATGAGCTACGTGAAGCCACCGGCGAGCGGCGTTTTGAAAGGAATGTTCGTCCCCAAGCTCAACGGCCAGGGAGCCACCGGCGACGCCATCGCTCTCCTCGGCGCCCTCGTTATGCCGCACAACCTCTTTCTTCACTCCGCTCTCGTGCTCTCCAGGAAAGTGCCCAATTCCGTCCGTGGCATCAATGATGCGTGCAGATACTTTCTGATAGAGAGCGGATTTGCTCTGTTCGTAGCATTTTTAATAAACGTGGCCGTCGTTTCAGTTTCCGGCACCGTCTGTACCGTCGGAAACGTCTCTCCGGCCACCGCCGATCAGTGCGGCGATATAACCCTCAACTCCGCCTCCTTCCTCCTCCAGAACGTTTTGGGGAAATCGAGCTCCACAATCTACGCTATTGCGTTGCTTGCCTCTGGACAGAGCTCCAGCATCACCGGCACTTATGCCGGGCAGTTCATTATGCAGGGGTTTTTGGACCTGAAAATGAAGACGTGGGCGAGAAATCTTATGACGAGGTCCATTGCGATTGCGCCCAGTCTCGTCGTCTCCATCATTGGTGGATCTCAAGGCGCTGGACGTCTCATCATCATCGCGTCGATGATTCTTTCCTTCGAGCTTCCATTTGCTCTAATTCCGCTTCTCAAATTCAGTAGCAGCACGACCAAGATGGGCCCCCACAAGAATTCCATATACATCATTGTAATTTCGTGGATATTGGGCCTGGCAATCATCGGCATAAACATCTACTATCTGAGCACGGCCTTCGTGGGCTGGCTAATCCACAGCGATCTACCAAAAGTTGCAAACGTATTAATAGGGATCGTGGTTTTTCCACTGATGGCCGTGTATATTCTTGCTGTTATATACCTAACGTTTCGAAAAGACAGGGTTGTGACTTACATAGAGCCCGAAAAGCACGATCCCATGGCCCAGGCCCATATGGAAAGTGGGCTCAGTAATTCTTTCGGGCCTGGTGACGTTGCCCCGGTTCCTTTCAGAGAGGATTTGGCCCATATTCCTCTTCCAGAA 1512 51.19 QKPGWRKFLSHVGPGFLVSLAYLDPGNLETDLQAGASHGYELLWVVLIGLIFALIIQSLAANLGVSTGKHLSEVCKAEYPKIVKYCLWLLAEVAVIAADIPEVVGTAFALNILFHIPVWAGVLLTGLSTLLLLGLQRYGARKLELLIAILVFVMAACFFGEMSYVKPPASGVLKGMFVPKLNGQGATGDAIALLGALVMPHNLFLHSALVLSRKVPNSVRGINDACRYFLIESGFALFVAFLINVAVVSVSGTVCTVGNVSPATADQCGDITLNSASFLLQNVLGKSSSTIYAIALLASGQSSSITGTYAGQFIMQGFLDLKMKTWARNLMTRSIAIAPSLVVSIIGGSQGAGRLIIIASMILSFELPFALIPLLKFSSSTTKMGPHKNSIYIIVISWILGLAIIGINIYYLSTAFVGWLIHSDLPKVANVLIGIVVFPLMAVYILAVIYLTFRKDRVVTYIEPEKHDPMAQAHMESGLSNSFGPGDVAPVPFREDLAHIPLPE 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20846427 20851537 - MC04g1288 Mch4g1793 686505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1793 504 PRINTS Natural resistance-associated macrophage protein signature 87 113 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch4g1793 504 PRINTS Natural resistance-associated macrophage protein signature 328 345 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch4g1793 504 PRINTS Natural resistance-associated macrophage protein signature 140 161 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch4g1793 504 PRINTS Natural resistance-associated macrophage protein signature 360 379 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch4g1793 504 PRINTS Natural resistance-associated macrophage protein signature 115 134 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch4g1793 504 PRINTS Natural resistance-associated macrophage protein signature 190 213 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch4g1793 504 PRINTS Natural resistance-associated macrophage protein signature 300 319 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch4g1793 504 NCBIfam Nramp family divalent metal transporter 13 379 - -
Mch4g1793 504 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 6 382 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch4g1793 504 Pfam Natural resistance-associated macrophage protein-like 29 390 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch4g1793 504 Hamap Divalent metal cation transporter MntH [mntH]. 2 416 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
Mch4g1793 504 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 2 463 IPR001046 GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1793 Mch-Chr4:20846427 Mch8g1067 Mch-Chr8:7546464 2.14E-214 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1793 K21398 - csv:101219356 890.952