Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1794 ATGTCCGCCCATAATCGCCGTCCGTCGTTCTCTTCGTCGACGTCCTCTTCGTTGGCCAAGCGACAAGCGTCGGCGTCGTCGTCGGACAATGTCGGGAAGGTTATGGCAGTTCCGCCACACTTGGCGAAGAAGCGAGCGCCACTCGGTAACCTCACGAATCTTAAGAATGGTTCTCACAGTGCGGCGAAAAGCTCTGTTCCGCCTGCTATTATGGTACCTTGTGCATCAAAAATTGTCAAGGCCAGAAAGGGTTCCCCTGCTAGAACTCGTAGCACAAACTTGCCAGCAAATAATACGCCCGCCTTGGCATTGCTTGATGTCAAAACAAATAATGTGCCTGCCCTGCTCCATGTCAAAACGAATAATACACCGAGTGTAGTTGCCCCTAGCAATGTTACAGCATTCTCTAGGAATGCTGCCACCACCGTCTCTAGTAGTATGGATGTCTCTCCGACTAAATCAGATGGAGTTTCAGTTTCTTTAGATGAAACTATGTCTACGTGTGATTCTTTCAAGAGTCCCGAGGTCGAATACATGGACAACAATGATGTCCCAGCTGTTGATTCCGTTGAGAGGAAAACTAAAATCAGTCTATGCATTTCAGATCACGCACCACCAGTGAAAGGTAGTATATGCAATAGAGATGTACTTGCAGAAATGGAAACAGATGGCGGTATTGTCGATCTCGATACTGATTTCATGGATCCCCAACAATGTGCTACAATCGCTTGTGATATTTACAGGCACTTAAGAGCATCTGAGGCAAAGAAAAGGCCGTCCACAGACTTCATGGAAAAGGTTCAGAAGGACATAAGTTCAAATATGCGTGCCATACTGATTGATTGGCTTGTGGAGGTAGCAGAGGAGTATAGGCTTGTGCCAGATACTCTATATTTGACCGTGAACTACATAGATCGATACCTATCTGGAAACTCGATGGATCGACAAAGGTTACAGTTGCTTGGAGTTGCTTGCATGATGATTGCTTCAAAATATGAAGAGATCTGTGCACCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATATTTTAAAGAAGAGGTATTGCAAATGGAATCTTCTGTTTTGAATTACTTGAAGTTCGAAATGACAGCTCCAACAGCAAAGTGTTTCTTAAGACGATTCGTTCGTGCTGCTCAAAGCGCCACCGATGAGGTTTCATCAATGCAGTTGGAATGCTTGGCCAACTTCCTCGCCGAATTGTCTCTTTTAGAATACAGTATGCTCTGCTACACCCCATCGCTTATAGCCGCCTCCGCAATTTTTTTGGCAAAGTTCATGCTTCTCCCGAATGAGAGACCATGGAACTCCACATTGCAGCATTATACACATTACCAGCCATCCGATCTCGTCGACTGCATTAAGGACTTGCATCGCCTCTGCTGCAACAGCCAAAATTCTAGCTTACCAGCCATCAGAGAGAAATACAGCCAACATAAGTACAAGCACGTGGCAAAGAAGTACTGCTCCCCGTCGATACCCCCGGAGTTCTTCCAGAATCAAACACACTAG 1536 45.44 MSAHNRRPSFSSSTSSSLAKRQASASSSDNVGKVMAVPPHLAKKRAPLGNLTNLKNGSHSAAKSSVPPAIMVPCASKIVKARKGSPARTRSTNLPANNTPALALLDVKTNNVPALLHVKTNNTPSVVAPSNVTAFSRNAATTVSSSMDVSPTKSDGVSVSLDETMSTCDSFKSPEVEYMDNNDVPAVDSVERKTKISLCISDHAPPVKGSICNRDVLAEMETDGGIVDLDTDFMDPQQCATIACDIYRHLRASEAKKRPSTDFMEKVQKDISSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSVLNYLKFEMTAPTAKCFLRRFVRAAQSATDEVSSMQLECLANFLAELSLLEYSMLCYTPSLIAASAIFLAKFMLLPNERPWNSTLQHYTHYQPSDLVDCIKDLHRLCCNSQNSSLPAIREKYSQHKYKHVAKKYCSPSIPPEFFQNQTH 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 20870820 20877820 + MC04g1289 Mch4g1794 686506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1794 511 SMART cyclin_7 378 467 IPR013763 -
Mch4g1794 511 SMART cyclin_7 281 365 IPR013763 -
Mch4g1794 511 MobiDBLite consensus disorder prediction 1 31 - -
Mch4g1794 511 MobiDBLite consensus disorder prediction 1 65 - -
Mch4g1794 511 SUPERFAMILY Cyclin-like 235 371 IPR036915 -
Mch4g1794 511 PANTHER CYCLINS 227 486 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Mch4g1794 511 FunFam Cyclin A1 361 494 - -
Mch4g1794 511 Pfam Cyclin, N-terminal domain 245 372 IPR006671 -
Mch4g1794 511 Gene3D - 245 494 - -
Mch4g1794 511 Gene3D - 259 372 - -
Mch4g1794 511 FunFam Mitotic cyclin 6 259 359 - -
Mch4g1794 511 SUPERFAMILY Cyclin-like 374 497 IPR036915 -
Mch4g1794 511 SMART Cyclin_C_2 374 498 IPR004367 -
Mch4g1794 511 Pfam Cyclin, C-terminal domain 374 495 IPR004367 -
Mch4g1794 511 CDD CYCLIN_AtCycA_like_rpt1 235 370 - -
Mch4g1794 511 CDD CYCLIN_AtCycA-like_rpt2 374 489 - -
Mch4g1794 511 ProSitePatterns Cyclins signature. 276 307 IPR048258 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0342 Mch-Chr11:2119280 Mch4g1794 Mch-Chr4:20870820 2.63E-95 dispersed
Mch4g1794 Mch-Chr4:20870820 Mch9g0378 Mch-Chr9:2821132 1.24E-98 dispersed
Mch4g1794 Mch-Chr4:20870820 Mch11g0583 Mch-Chr11:3718821 4.30E-99 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1794 K06627 - csv:101221569 836.254