Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g1816 | GTCAGAATCTTCACCCAAGAGGAACTGGAGAAGGCCACGAACAAGTACGATGAGAGCGCAGTGGTCGGAAAAGGCGGATACGGCACCGTTTACAAAGGAGTTTTGGAGGATGGTTTGGTAGTTGCAATAAAGAAATCGAAATTAGTGGACCAATCCCAAACTTCCCAGTTCATCAACGAAGTGATGGTTCTGTCCCAAATCAACCACCGCAACGTGGTCAAGCTCTTGGGCTGCTGTTTGGAGACGCAAGTTCCATTATTGGTGTATGAGTTCATCACGAACGGCACACTTTACGACCACATCCATGACAAAGCGAATCACGATTATTCCCTTCCATGGGAAGCCCGCTTGAGAATTGCTTCGGAAACTGCGGGGGTAATTTCGTATTTGCATTCCTCAGCCTCCACTCCAATCATCCACAGAGACATCAAGACCACCAACATACTATTAGACCAAAACTACACTGCCAAAGTCTCTGATTTCGGCGCTTCCAAGTTGGTTCCGTTGGATCAAACTCAGCTGTCTACGATGGTGCAAGGGACTCTCGGGTATCTGGACCCGGAGTACTTGTTGACGAGCGAGTTGACGGAGAAGAGCGACGTGTACAGCTTTGGAATAGTGCTTATGGAGCTCATAACGGGGAAGAAGGCGGTGAGTTTCGAGGGGCCGGAAGCGGAGAGGAATCTGGCGATGTATGTGCTGTGTGCAATGAAGGAGGATCGTTTGGAAGAAGTTGTGGAGAAGGGAATGGCGAGGGAGGGGAAGTTGGAGCAGATAAAAGAAGTGGCAAAGGTGGCAAAAGAGTGTTTGAGAGTAAGGGGGGAGGAGAGACCGAGCATGAAGGAGGTAGCCATGGAGTTGGAG | 864 | 49.77 | VRIFTQEELEKATNKYDESAVVGKGGYGTVYKGVLEDGLVVAIKKSKLVDQSQTSQFINEVMVLSQINHRNVVKLLGCCLETQVPLLVYEFITNGTLYDHIHDKANHDYSLPWEARLRIASETAGVISYLHSSASTPIIHRDIKTTNILLDQNYTAKVSDFGASKLVPLDQTQLSTMVQGTLGYLDPEYLLTSELTEKSDVYSFGIVLMELITGKKAVSFEGPEAERNLAMYVLCAMKEDRLEEVVEKGMAREGKLEQIKEVAKVAKECLRVRGEERPSMKEVAMELE | 288 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 21066059 | 21066922 | + | MC04g1303 | Mch4g1816 | 686528 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g1816 | 288 | ProSitePatterns | Protein kinases ATP-binding region signature. | 22 | 45 | IPR017441 | GO:0005524(InterPro) | |
| Mch4g1816 | 288 | FunFam | Wall-associated receptor kinase 2 | 92 | 288 | - | - | |
| Mch4g1816 | 288 | FunFam | Wall-associated receptor kinase 2 | 1 | 91 | - | - | |
| Mch4g1816 | 288 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 138 | 150 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Mch4g1816 | 288 | Pfam | Protein tyrosine and serine/threonine kinase | 20 | 287 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Mch4g1816 | 288 | Gene3D | Transferase(Phosphotransferase) domain 1 | 92 | 288 | - | - | |
| Mch4g1816 | 288 | SMART | serkin_6 | 16 | 285 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch4g1816 | 288 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 91 | - | - | |
| Mch4g1816 | 288 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 287 | IPR011009 | - | |
| Mch4g1816 | 288 | ProSiteProfiles | Protein kinase domain profile. | 16 | 288 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch4g1816 | 288 | PIRSF | ILK | 3 | 288 | - | - | |
| Mch4g1816 | 288 | CDD | STKc_IRAK | 22 | 288 | - | - | |
| Mch4g1816 | 288 | PANTHER | WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 | 1 | 288 | IPR045274 | GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(PANTHER)|GO:0007166(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch4g1816 | Mch-Chr4:21066059 | Mch6g1473 | Mch-Chr6:13823753 | 4.93E-109 | dispersed | |
| Mch4g1814 | Mch-Chr4:21045706 | Mch4g1816 | Mch-Chr4:21066059 | 5.59E-188 | proximal |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 77349 | PF07714 | PK_Tyr_Ser-Thr | 5.70E-49 | CL0016 | Mch | PK |
Pathway information