Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1871 ACGAAATTGCCCTCCATTTTCACTCGGAATACCCAATCACTCCATCTTCTTCCTCAAGATTCTATCAACAGTCAAAGATCCTCTCTCCTGATCAATAAATATTCCCAATCTACTGAGTCTCTGCCTCTTTCTCCCTTACTTTCTCCTCCAATTTCTCCTCTGGTATGGCGTCTCCTCGTCTCTCTTGACGCCATGGCGGACATGGATTTCGTTGAGGGTGTTGGAGAGAGTTCTTCGCCGCCTAGAACCTTCGGAGCCTTCTGTGCTGTCCACGATGTTCGGAACGATGTTTATACTCGGTTGGTGGAAAGTGGACACGAGGAGGCCGTTTCTAATCCCGAATTTCGCGAGAATTTGGATGCCCACTTCAATCGCTTGCCTCCTAGTTATGGACTTGATGTTAACATGGAGAAGGTGGAAGATGTTTTGTTACATCAAAAGCTTCTTTCCCTAGCAAAGGATCCAGAGAAGTGCCCTGTTTACCACATTCGTTTTCTGGAGCGCATAAGTACTAAATCAGATGGCAATGATGATCACAACCTTGACAGTACTCTTATAAGTGGTTCATCTAATGAAGCAGCTGATAGAAGATTTCCACTGTCACACAAGAGAACTAGAGGCAATATAATTGACTTCGAGCCTTGTTCCAAGCTTGAGGACTTGAATTTGGATGTTAAAAAGAACTCAAAGGCCACAGATGGGAGATATCATATGGAAAATTTTTCCGAAAGGCAGGGTATTTCACATGTTCCAATACATGAAGTGATATTTTCAACTGTTGACAAGCCAAAGCTTCTTAGCCAGCTTTCTGCTTTGCTTTCTGATATAGGACTTAACATCCGAGAAGCACATGTGTTTTCAACGTCTGATGGTTACTCCTTGGATGTATTTGTGGTGGATGGATGGCCTGTTGAGGAAACTGATGGTTTGTACGAAGCTATGGAAAAAGCAGTTGCTAGATATGAGGGGTCATGGTCCGGTTCTTCACATTCTCATTCAGCAGTCAAGAAAGCATTAGACGCCCAAGCAAAATCAGCAGATTGGGAAATAGATAGACGGTTACTGAAGATAGGTGAAAGAATCGCATCTGGATCTTGTGGTGACTTGTATCATGGATTATATCTTGGTCAAGATGTAGCTGTCAAGATATTAAGATCTGAAGATTTAAATGATGATTTAGAGGATGAATTCAATCAAGAAGTGGAAATTCTCAGGAAGGTCCAGCATAAAAATGTAGTTCGTTTTATAGGTGCTTGTACAAAGTCTCCACATTTGTGTATTGTAACAGAGTATATGCCAGGAGGGAGTCTTTACGATTACTTGCACAAGAACCATTGTGTGTTAAAGCTCTCACAACTGCTGAAGTTTGCTATTGATGTTTGTGAAGGAATGGAATACTTACATCTAAATAACATTATTCATAGAGACTTGAAGACGGCAAATTTGCTAATGAATACTCAACATGTTGTAAAGGTGGCAGATTTTGGAGTTGCGCGTTTCCAGAGCCAAGAAGGAGTAATGACAGCAGAAACTGGAACATACAGGTGGATGGCGCCTGAGGTAATAAATCATCTGCCATATGATCAGAAAGCAGACATTTTCAGTTTTGCGATTGTTCTATGGGAACTAGTGACAGCAAAGGTTCCTTATGATTCCATGACACCACTACAAGCTGCCCTTGGAGTAAGACAGGGACTACGTCCAGATCTTCCCAAGAATATGCACCCTAAATTGTTGGATTTGATGCAAAGATGTTGGGATGCAGATCCTTTAACCCGGCCTCCATTTACTGACATAAAAGTTGAACTTGAGAATCTCCTTGAAGAAGTTCAGATGTGTACAAAATATGAGGAAATTTGTGCAGCAGTTAATGGCAGCTGA 1881 41.68 TKLPSIFTRNTQSLHLLPQDSINSQRSSLLINKYSQSTESLPLSPLLSPPISPLVWRLLVSLDAMADMDFVEGVGESSSPPRTFGAFCAVHDVRNDVYTRLVESGHEEAVSNPEFRENLDAHFNRLPPSYGLDVNMEKVEDVLLHQKLLSLAKDPEKCPVYHIRFLERISTKSDGNDDHNLDSTLISGSSNEAADRRFPLSHKRTRGNIIDFEPCSKLEDLNLDVKKNSKATDGRYHMENFSERQGISHVPIHEVIFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTSDGYSLDVFVVDGWPVEETDGLYEAMEKAVARYEGSWSGSSHSHSAVKKALDAQAKSADWEIDRRLLKIGERIASGSCGDLYHGLYLGQDVAVKILRSEDLNDDLEDEFNQEVEILRKVQHKNVVRFIGACTKSPHLCIVTEYMPGGSLYDYLHKNHCVLKLSQLLKFAIDVCEGMEYLHLNNIIHRDLKTANLLMNTQHVVKVADFGVARFQSQEGVMTAETGTYRWMAPEVINHLPYDQKADIFSFAIVLWELVTAKVPYDSMTPLQAALGVRQGLRPDLPKNMHPKLLDLMQRCWDADPLTRPPFTDIKVELENLLEEVQMCTKYEEICAAVNGS 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21411785 21424830 - MC04g1335 Mch4g1871 686583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1871 626 SUPERFAMILY Protein kinase-like (PK-like) 344 608 IPR011009 -
Mch4g1871 626 ProSiteProfiles Protein kinase domain profile. 355 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1871 626 Pfam Protein tyrosine and serine/threonine kinase 355 602 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g1871 626 Coils Coil 390 410 - -
Mch4g1871 626 PRINTS Tyrosine kinase catalytic domain signature 429 442 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g1871 626 PRINTS Tyrosine kinase catalytic domain signature 531 553 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g1871 626 PRINTS Tyrosine kinase catalytic domain signature 574 596 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g1871 626 PRINTS Tyrosine kinase catalytic domain signature 512 522 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g1871 626 PRINTS Tyrosine kinase catalytic domain signature 466 484 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g1871 626 Gene3D Transferase(Phosphotransferase) domain 1 433 623 - -
Mch4g1871 626 Gene3D Phosphorylase Kinase; domain 1 342 432 - -
Mch4g1871 626 CDD STKc_MAP3K-like 361 599 - -
Mch4g1871 626 ProSiteProfiles ACT domain profile. 254 328 IPR002912 -
Mch4g1871 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g1871 626 PANTHER SERINE-THREONINE PROTEIN KINASE 36 607 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Mch4g1871 626 SUPERFAMILY ACT-like 253 324 IPR045865 -
Mch4g1871 626 FunFam Serine/threonine-protein kinase isoform 1 345 433 - -
Mch4g1871 626 SMART serkin_6 355 607 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0549 Mch-Chr11:3520804 Mch4g1871 Mch-Chr4:21411785 2.57E-10 dispersed
Mch4g0457 Mch-Chr4:2917781 Mch4g1871 Mch-Chr4:21411785 1.08E-171 dispersed
Mch4g1871 Mch-Chr4:21411785 Mch8g2582 Mch-Chr8:28960626 6.72E-78 dispersed
Mch4g1871 Mch-Chr4:21411785 Mch10g1800 Mch-Chr10:17693023 1.69E-168 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77352 PF07714 PK_Tyr_Ser-Thr 4.50E-72 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1871 - - - 0.0