Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1880 GTGATGGACTTGAACTTCACCGCCCGGAAACCGCCGCAGACGGCGGCAAGGATGGACATAGAGCAGATGCCGGAGGCTCCACAGCGCGGCTACCACCACCGCCGTTCCCACTCCGATACCTCCTTCCGCTTCGCCAATTTCGACGATCTTCTCTTCGACCCTCCCGACCTCGATTTATCGTCTTCCCTCCGTTCTCCCTCGCCGTCGCCGTCGCCGTCGCCGGTGGGGGCATGCGTAGCGGTGGATTCTTTTAGCTCCAAGTCCCCTGAAGACGCCTCGGCCTCGAAGCCTAGAGCCGGAAACTCCGGCTCTTTCTACGGTGGTCACTGCCGGAGCTTGTCCATGGATTCCGACTTTTTCGAGGGTTTGGGGATCGCCGGAGATGGCAGCGACGGTGAGGTCCTCGGCGGGAGGGTGGGGGTAGGGGAGAAGAAGATGGGGCGCCATAGACATAGCAATTCCATGGATGGCTCTTTCACCTCCTCGTTTGAAGCCGAATCCACCGTCGTAATTGATAACTCGAAGAAGGCCTTGGCGCCAGATAAACTCGCTGAACTTGCTTTAATGGACCCCAAACGAGCTAAGAGGATTCTGGCGAATAGACAATCTGCTGCGCGATCCAAGGAGAGGAAAATACGTTACACTAATGAACTAGAGAAGAAGGTGCAGACACTTCAGTCAGAAGCAACTTCCCTTTCTGCGCAGCTCACAGTGCTTCAGAGAGATACCACTGGATTGAGTGCTGAGAATAGGGAACTCAAACTGAGGCTGCAGGCCATGGAGCAGCAAGCCCAGCTCAGGGATGCTCTGAATGACACCCTGAGGGAGGAAGTGCAGCGGCTGAAGATAGCTGCTGCCCAGCTGCCTGCTGCTAATGGCAGCAACTCATTCAACACCGGAGGAGGGCTGCCCCCTCAATTCCCTACTGCTCTCCATCCATCCTTGCTTCAGTTTGGCGACTCTCCGAATCATCGACACCAACAGCTGCTTCACATGCCTCAGCCTGATGCTCAAGGAGTGTCTTCGCTGTCCCAGCTTCCTGGAGGTTAA 1050 56.38 VMDLNFTARKPPQTAARMDIEQMPEAPQRGYHHRRSHSDTSFRFANFDDLLFDPPDLDLSSSLRSPSPSPSPSPVGACVAVDSFSSKSPEDASASKPRAGNSGSFYGGHCRSLSMDSDFFEGLGIAGDGSDGEVLGGRVGVGEKKMGRHRHSNSMDGSFTSSFEAESTVVIDNSKKALAPDKLAELALMDPKRAKRILANRQSAARSKERKIRYTNELEKKVQTLQSEATSLSAQLTVLQRDTTGLSAENRELKLRLQAMEQQAQLRDALNDTLREEVQRLKIAAAQLPAANGSNSFNTGGGLPPQFPTALHPSLLQFGDSPNHRHQQLLHMPQPDAQGVSSLSQLPGG 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21473069 21479656 - MC04g1341 Mch4g1880 686592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1880 349 CDD bZIP_plant_RF2 193 242 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1880 349 SMART brlzneu 188 252 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1880 349 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 190 253 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1880 349 FunFam Transcription factor VIP1 191 244 - -
Mch4g1880 349 Gene3D - 191 245 - -
Mch4g1880 349 Coils Coil 215 263 - -
Mch4g1880 349 MobiDBLite consensus disorder prediction 1 37 - -
Mch4g1880 349 SUPERFAMILY Leucine zipper domain 192 244 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1880 349 MobiDBLite consensus disorder prediction 320 349 - -
Mch4g1880 349 MobiDBLite consensus disorder prediction 295 349 - -
Mch4g1880 349 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 332 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch4g1880 349 MobiDBLite consensus disorder prediction 57 79 - -
Mch4g1880 349 Pfam bZIP transcription factor 192 244 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1404 Mch-Chr11:10289053 Mch4g1880 Mch-Chr4:21473069 4.38E-112 dispersed
Mch4g0544 Mch-Chr4:3432065 Mch4g1880 Mch-Chr4:21473069 3.93E-43 dispersed
Mch4g0545 Mch-Chr4:3439687 Mch4g1880 Mch-Chr4:21473069 9.04E-43 dispersed
Mch4g1880 Mch-Chr4:21473069 Mch5g0853 Mch-Chr5:6027882 4.41E-50 dispersed
Mch4g1880 Mch-Chr4:21473069 Mch2g0519 Mch-Chr2:3681985 1.36E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43234 PF00170 bZIP_1 1.70E-07 CL0018 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1880 K20557 - csv:101215277 424.476