Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1886 ATGTCATTCCGCAGCATACTTCGTGATGTGAGGGATGGATTTGGGAGCTTATCAAGGCGTAGTTTTGAGGTGAGGCTGCCTGGCCAATGCCGGGGTAAATCTCATGAACCGGATCTTGAGTTTGATGACGAGCCTTTGCCAATCCAGACTAGCCGCTGGGCAAGCCTTCCACCAGACTTATTATGCGATGTGGTCAGAAGACTGGTGGCAAGTGAGAGTACTTGGCCCGCTCGGAGAAATGTTGTTTCTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGTAAAGAAATTGTCAAAAATCCCGAGTTATCCGGGAAAATTACCTTCCCCATCTCCTTGAAGCAGCCTGGGCCGCGAGATGGAACTATTCAATGCTTTATCAAAAGGAACAAATCTAATTTAACTTATCATCTTTATCTTTGCCTCAGTCCGGCTCTACTTGTTGAGAATGGGAAATTTCTTCTTTCTGCAAAAAGAACCAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCAGACGATATATCGAGATCGAGTAGCGGTTACATCGGAAAGCTAAGATCAAATTTTCTGGGAACCAAATTTATTATATATGATACGCAGCCTCCTTACAACAGCAACCAGATTCCGACCCTCGGTCGAAGCCGAAGATTCTACTCCAAAAAGGTCTCTCCAAAGGTCCCAGCCGGTAGCTACAGCATTGCACAAATTGCATACGAGTTAAATGTATTAGGTACACGGGGACCTCGGAGGATGCACTGCACCATGTATTCAATCCCAACTTCATCTCTCGAGCCAGGTTGCTCAGTTCCAGGCCAGCCCGAGCTCAACCCTCGCCCCCTCGAAGACTCGTTTCGAAGCATTTCGTTCTCCAAGTCGATCGATCATTCCACTGAGTTCAGCAGTTCCCGCTTCTCTGATATTGCGGGAGTACTCAATGAAGATGACGAGGGGAAGGACCAACCCCTGATTCTCCGCAACAAGGCACCAAGATGGCACGAGCAGTTGCAGTGCTGGTGCCTTAACTTCCGGGGGAGGGTGACTGTTGCATCTGTGAAGAATTTTCAGCTGATCGCTGCAACCTCGCCTGCTTCAGAAGCACCCGTACCGCCGCAGCCTCCTCCCCAGCCCAGCCAGCCTTCCCATTCAGACCATGACAAGGTCATTCTTCAGTTTGGAAAGGTCGGTAAGGACATGTTTACAATGGATTATCGATACCCGCTGTCTGCGTTCCAGGCTTTCGCTATATGTCTCAGCAGCTTTGACACCAAATTGGCATGTGAATAG 1296 48.53 MSFRSILRDVRDGFGSLSRRSFEVRLPGQCRGKSHEPDLEFDDEPLPIQTSRWASLPPDLLCDVVRRLVASESTWPARRNVVSCAAVCRSWRDMCKEIVKNPELSGKITFPISLKQPGPRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAKRTRRTTSTEYVISLAADDISRSSSGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGSYSIAQIAYELNVLGTRGPRRMHCTMYSIPTSSLEPGCSVPGQPELNPRPLEDSFRSISFSKSIDHSTEFSSSRFSDIAGVLNEDDEGKDQPLILRNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPASEAPVPPQPPPQPSQPSHSDHDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21539841 21544256 + MC04g1348 Mch4g1886 686598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1886 431 CDD F-box_AtTLP-like 53 97 - -
Mch4g1886 431 MobiDBLite consensus disorder prediction 369 383 - -
Mch4g1886 431 Gene3D - 48 104 - -
Mch4g1886 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Mch4g1886 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Mch4g1886 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Mch4g1886 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Mch4g1886 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Mch4g1886 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Mch4g1886 431 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Mch4g1886 431 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Mch4g1886 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Mch4g1886 431 Pfam Tub family 114 426 IPR000007 -
Mch4g1886 431 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Mch4g1886 431 Gene3D Tubby Protein; Chain A 113 425 IPR025659 -
Mch4g1886 431 PANTHER TUBBY-RELATED 40 430 - -
Mch4g1886 431 FunFam Tubby-like F-box protein 110 431 - -
Mch4g1886 431 SUPERFAMILY F-box domain 47 96 IPR036047 GO:0005515(InterPro)
Mch4g1886 431 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Mch4g1886 431 MobiDBLite consensus disorder prediction 366 387 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1391 Mch-Chr11:10006150 Mch4g1886 Mch-Chr4:21539841 2.20E-246 dispersed
Mch1g1508 Mch-Chr1:16517309 Mch4g1886 Mch-Chr4:21539841 1.26E-142 dispersed
Mch4g1886 Mch-Chr4:21539841 Mch7g1139 Mch-Chr7:15273539 1.30E-148 dispersed
Mch4g1886 Mch-Chr4:21539841 Mch10g0790 Mch-Chr10:5496465 9.03E-154 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43236 PF01167 Tub 8.90E-116 CL0395 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1886 K19600 - csv:101203074 789.26