Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1890 ATGGCATCGTCGAAGCTGTTGGCATCTTCGAATTCGAGAAATTCGGATCTCTCCCGGGGTTCTTCTTCTTCTTCTTCATCGTCTTCTTCTCTTTTAAAGGGTCAATTTCTCTCCAATCGTGCCCGGAATAATGACAGAGGAACTCTCAGTCTTAGCTCAATGACCGTCGATGGCCTACTTCGCAATGGCTATGACTCCAATCCCACGGAGTCCATTCTCTTAGATGCCCAGATCACGCTCGTTGATTCCCCCAACCCTTCTTCCTTTCCCATGAATGCCACCGCCACCAATTCCTCAGCCGTCATTGATACCAATCACACTGCTTCATCTGCTGCCCCCAAAACTGTGGATGATGTGTGGAGGGAGATTGTATCTGGTGAGAGAAAGGAGTTGAAGGAGGAGGTCGCGGACGAGTTGATAACACTGGAGGATTTCCTTGTTAAGACTGGAGCTGTTCCTGTTGAGGACGTGAAGTTACCTCAGACAGAGAGGCTGAGTGGAGGGATTTATAGTTTTGATCCAATTCCACCCACCCAATTCCAGGCATTGGATAAGGTCGAAGGATCCATAATCGGATTTGGAAGTGGGGTCGATTTGATTGGCAGTGGAGGCAGTGGAGGGAGAGGGAAGAGAGGGCGAGCTGCTTTGGAACCTTTAGATAAGGCCGCTGAGCAAAGGCAGAGGAGAATGATCAAGAATAGGGAATCCGCGGCAAGATCTAGGGAACGGAAGCAGGCTTATCAAGTGGAATTAGAATCGTTAGCTGTAAGATTAGAGGAGGAGAATGAGCGGCTTTTGAGGGAAAAGGCTGAGAGGACCAAGGAAAGGTTTAAGCAGCTAATGGAAAAAGTGATTCCTGTAGTGGAAAAGCGACGACCACCACGAGTCATTCGACGAGTTCATTCGATGACGTGGTGA 918 48.8 MASSKLLASSNSRNSDLSRGSSSSSSSSSSLLKGQFLSNRARNNDRGTLSLSSMTVDGLLRNGYDSNPTESILLDAQITLVDSPNPSSFPMNATATNSSAVIDTNHTASSAAPKTVDDVWREIVSGERKELKEEVADELITLEDFLVKTGAVPVEDVKLPQTERLSGGIYSFDPIPPTQFQALDKVEGSIIGFGSGVDLIGSGGSGGRGKRGRAALEPLDKAAEQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENERLLREKAERTKERFKQLMEKVIPVVEKRRPPRVIRRVHSMTW 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21569061 21575252 + MC04g1352 Mch4g1890 686602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1890 305 Gene3D - 223 284 - -
Mch4g1890 305 Coils Coil 244 283 - -
Mch4g1890 305 CDD bZIP_plant_BZIP46 225 252 - -
Mch4g1890 305 SMART brlzneu 221 283 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1890 305 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 228 243 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1890 305 MobiDBLite consensus disorder prediction 1 50 - -
Mch4g1890 305 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 223 282 - -
Mch4g1890 305 SUPERFAMILY Leucine zipper domain 226 276 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1890 305 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 30 279 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Mch4g1890 305 Pfam bZIP transcription factor 223 283 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1890 305 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 223 275 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0999 Mch-Chr4:8703343 Mch4g1890 Mch-Chr4:21569061 2.08E-33 dispersed
Mch4g1890 Mch-Chr4:21569061 Mch4g1948 Mch-Chr4:21971706 7.49E-15 dispersed
Mch4g1890 Mch-Chr4:21569061 Mch8g0681 Mch-Chr8:4859697 1.17E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43237 PF00170 bZIP_1 9.30E-12 CL0018 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1890 K14432 - csv:101223110 402.134