Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1917 ATGGCGGCTGCAGTTCAGGCACCGGTGACGGCCGCACAAGTTCAGCCGGCGGCGATTCCTCCTCCAGTGGGCTCTGCGGCCACTGGAGCCGGGTTTTTGAGTTCGTCATTGTACGTGGGCGATCTGGACCAGAGTGTGAACGAGGGACAGCTTTTGGAAGTGTTCGGCCAAGTCGCTCAGGTTGTCTCCATTAGGGTTTGCAGGGATCAGACGCGCAGGCAATCGCTTGGATATGCTTATGTTAATTTCAGCAATCATCAGGATGCTTCCAACGCCATGGAACTTTTGAATTTCACCCCTGTTAATGGGAAGCCTATCAGGATTATGATTTCTAATCGAGATCCAAGCATTCGGAAAAGTGGACATGCAAATGTTTTTATAAAAAATCTGGACATATCAATTGATAACAAGGCATTACACGATACATTTGCTGCCTTTGGTACTGTTCTTTCTTGTAAAGTTGCTGTTGACAGCAATGGTCAATCAAAAGGTTATGGATTTGTACAGTTTGAAAGTGAGGAAGCTGCAGAAAGTGCTATTATAAGATTGAATGGCATGCTGATCAATGATAAGCAAGTTTATGTTGGACATTTTATTCGACACCAGGAAAGAATTCGAGCAAATGGATCGATGTTTACTAATGTTTACGTGAAGAATTTACCAGAAACTACAACAGACGATGACCTAAAAGATATTTTTGCTGCACATGGTTCCATTACTAGTGCAGTTGTCATGAGAGATTCAAATGGGAAGTCCAGATGTTTTGGTTTTGTGAACTTCCAGACCTCAGATGCTGCTGCTGTAGCAGTTGAAAAGTTGAATGGTACTATCCTTGGTGATGACAAGGTTCTGTATGTAGGCAGGGCTCAAAGGAAATCAGAAAGAGAGGCTGAGTTGAAAGCAAAATATGAGCAGGAAAGACTGAGTAGATTTGAAAAATTACAAGGTGCTAATTTGTACATCAAAAATATTGATGACCATGTCGATGATGAAAAGCTTAAAGAGTTATTCTCTGAGTTTGGAACAATCACATCATGCAAGGTTATGCTTGACCAACATGGGCTGAGCAAGGGGTCTGGTTTTGTAGCCTTTTCTTCATCTGAGGAAGCGACAAAAGCTTTAAATGAAATGAATGGAAAGATGATTGGAAGGAAACCTCTGTATGTAGCTGTTGCTCAGCGCAAAGAAGAGAGAAAGGCTCGGCTGCAGGCTCAATTTGCGCAAATCCGAGCAGCTGGTGGAATGTCATCTTTGCCTTCAGGAATTCCAGGATTTCATCCAGGGGCACCAAGACTTGCTCCTCAGCAGATGTATTATGGTCAGGGTAACGGGCTGGTTCCCCCACAGCCTGCTGGATATGGCTTCCAGCCTCAACTCATGACCGGGATGCGACCTGGTATGGCCCCCAACTACATGGTGCCTTATCAGTTTCAGAGGCAAGGACAACCAGGGCGTGGCCCCGGAATGAGGCGAGGCGGAAATTCGCAACCGGTTCAGCAGCAGCAGATGGTGCTCCGTGGCTCTGGACAAGGTTTTAGATACATGAACAATGCACGAAATGGTTTGGAATCGCCCGTCCTGCCCCAAGGTCTTGTTGGCCCTCCAATGATGCCTCTGGCTTTTGAGAGTTCGGGAGTGACTAGCTCCCCCATCGACATCCAGCGATCAAGGACTGTGCCTACTTCAACACTTGCTTCTGCATTAGCTTCCGCTACGCCCGAAAATCAGCGTGTGATGCTCGGCGAGCAGCTGTATCCACTCGTGGATCGCCTCGAGCCAGGTCATGCAGCAAAGGTTACTGGAATGCTGCTGGAGATGGACCAACCAGAGGTGCTCCATCTCATCGAGTCACCGGATGACTTGAAGAATAAGGTGGCCGAGGCTATGGAAGTCCTCCGCAAAGCTACATCAGAACCCGAGCTTACTGATCAGCTCACTTCACTGGCCCTGAACAAATGA 1959 47.12 MAAAVQAPVTAAQVQPAAIPPPVGSAATGAGFLSSSLYVGDLDQSVNEGQLLEVFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSNHQDASNAMELLNFTPVNGKPIRIMISNRDPSIRKSGHANVFIKNLDISIDNKALHDTFAAFGTVLSCKVAVDSNGQSKGYGFVQFESEEAAESAIIRLNGMLINDKQVYVGHFIRHQERIRANGSMFTNVYVKNLPETTTDDDLKDIFAAHGSITSAVVMRDSNGKSRCFGFVNFQTSDAAAVAVEKLNGTILGDDKVLYVGRAQRKSEREAELKAKYEQERLSRFEKLQGANLYIKNIDDHVDDEKLKELFSEFGTITSCKVMLDQHGLSKGSGFVAFSSSEEATKALNEMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRAAGGMSSLPSGIPGFHPGAPRLAPQQMYYGQGNGLVPPQPAGYGFQPQLMTGMRPGMAPNYMVPYQFQRQGQPGRGPGMRRGGNSQPVQQQQMVLRGSGQGFRYMNNARNGLESPVLPQGLVGPPMMPLAFESSGVTSSPIDIQRSRTVPTSTLASALASATPENQRVMLGEQLYPLVDRLEPGHAAKVTGMLLEMDQPEVLHLIESPDDLKNKVAEAMEVLRKATSEPELTDQLTSLALNK 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21769451 21774961 - MC04g1377 Mch4g1917 686629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1917 652 Pfam Poly-adenylate binding protein, unique domain 567 632 IPR002004 GO:0003723(InterPro)
Mch4g1917 652 SMART poly_2 572 635 IPR002004 GO:0003723(InterPro)
Mch4g1917 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 195 IPR000504 GO:0003723(InterPro)
Mch4g1917 652 SUPERFAMILY PABC (PABP) domain 467 640 IPR036053 GO:0003723(InterPro)
Mch4g1917 652 FunFam Polyadenylate-binding protein 300 405 - -
Mch4g1917 652 PANTHER RNA BINDING PROTEIN 213 480 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Mch4g1917 652 Gene3D - 208 314 IPR012677 -
Mch4g1917 652 Gene3D - 124 197 IPR012677 -
Mch4g1917 652 CDD RRM3_I_PABPs 212 292 - -
Mch4g1917 652 SUPERFAMILY RNA-binding domain, RBD 35 200 IPR035979 GO:0003676(InterPro)
Mch4g1917 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723(InterPro)
Mch4g1917 652 FunFam Polyadenylate-binding protein 13 117 - -
Mch4g1917 652 Coils Coil 392 412 - -
Mch4g1917 652 Pfam RNA recognition motif 37 107 IPR000504 GO:0003723(InterPro)
Mch4g1917 652 Pfam RNA recognition motif 319 387 IPR000504 GO:0003723(InterPro)
Mch4g1917 652 Pfam RNA recognition motif 125 193 IPR000504 GO:0003723(InterPro)
Mch4g1917 652 Pfam RNA recognition motif 215 282 IPR000504 GO:0003723(InterPro)
Mch4g1917 652 MobiDBLite consensus disorder prediction 480 500 - -
Mch4g1917 652 Gene3D - 27 123 IPR012677 -
Mch4g1917 652 SUPERFAMILY RNA-binding domain, RBD 213 398 IPR035979 GO:0003676(InterPro)
Mch4g1917 652 Coils Coil 286 306 - -
Mch4g1917 652 SMART rrm1_1 124 196 IPR000504 GO:0003723(InterPro)
Mch4g1917 652 SMART rrm1_1 36 109 IPR000504 GO:0003723(InterPro)
Mch4g1917 652 SMART rrm1_1 318 390 IPR000504 GO:0003723(InterPro)
Mch4g1917 652 SMART rrm1_1 214 287 IPR000504 GO:0003723(InterPro)
Mch4g1917 652 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 35 633 IPR006515 GO:0003723(InterPro)
Mch4g1917 652 SMART rrm2_1 36 109 IPR003954 GO:0003676(InterPro)
Mch4g1917 652 SMART rrm2_1 318 390 IPR003954 GO:0003676(InterPro)
Mch4g1917 652 SMART rrm2_1 214 286 IPR003954 GO:0003676(InterPro)
Mch4g1917 652 SMART rrm2_1 124 196 IPR003954 GO:0003676(InterPro)
Mch4g1917 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723(InterPro)
Mch4g1917 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723(InterPro)
Mch4g1917 652 CDD RRM2_I_PABPs 121 197 IPR045305 -
Mch4g1917 652 CDD RRM4_I_PABPs 316 394 - -
Mch4g1917 652 FunFam Polyadenylate-binding protein 205 299 - -
Mch4g1917 652 Gene3D - 556 637 - -
Mch4g1917 652 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 560 637 IPR002004 GO:0003723(InterPro)
Mch4g1917 652 FunFam Polyadenylate-binding protein 118 204 - -
Mch4g1917 652 Gene3D - 315 413 IPR012677 -
Mch4g1917 652 FunFam Polyadenylate-binding protein 556 638 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0486 Mch-Chr10:3159463 Mch4g1917 Mch-Chr4:21769451 1.00E-221 dispersed
Mch4g0706 Mch-Chr4:4751196 Mch4g1917 Mch-Chr4:21769451 2.20E-217 dispersed
Mch4g1917 Mch-Chr4:21769451 Mch5g1681 Mch-Chr5:17588101 2.25E-141 dispersed
Mch4g1913 Mch-Chr4:21760349 Mch4g1917 Mch-Chr4:21769451 6.94E-07 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1917 K13126 - csv:101219081 1056.97