Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1936 ATGGAGAAGTTTCCTGGTTGTTTCCTCCACTCTCTGTTGATCTTTCTCTTCATTTTGAGTCTTTTTGTTACAAGTCTGCCTCTTCCGACCGAGACTCAAGCGTTGCTTCGTTTCAAAGAGAATCTCAAAGACCCTTCGGGTTTTCTTCATTCTTGGGTTGATTCTGAATCCCCTTGTGGATTCTCCGGGATTACTTGTGATCGGGTTTCTGGAGAAGTCGTAGAAATTTCCTTGGAAAACAAGTCGCTTACCGGTGAGATTTCTCTGTCAATTTCTGCTCTGCAAAGTCTCACAACACTTTCATTGGCCACAAACCACATTTCTGGGGAGCTCCCCTACCAACTGATCAACTGTAGCAATCTTAGAGTACTGAACCTTACAGACAATGAAATGGTTGGTAAGATTCCGGATCTTTCTCAGCTGAGAAAATTGGAGGTTCTAGATCTATCAAGCAACTTGTTCTCTGGCCAATTCCCAATCTGGGTTGGAAATTTAACTGAATTGGTTTCTCTGGGTCTTGGTGAAAATGATTTTGAGGCTGATGAAATACCAGAATCTATTGGAAATCTGAAGAACTTAACTTGGCTATATCTAGCAAATGCACAACTGAGAGGGGAAATACCAGAGTCTCTTTATGAACTGAAGGCATTACAGACACTGGATCTTTCAAGGAACAAGATTTCTGGGAAGATCTCCAAGTCAATATCCAAGTTACAGAATCTGAATAAGCTTGAGCTTTTTGTAAACAATTTGACTGGAGAAATCCCACCAGAGATTGCAAACCTTACCCTTCTGCAAGAAATCGATATTTCTGCAAATAGTTTGAGTGGGGAGTTGCCTGAAGAGGTTGGGAATCTGAGGAATTTGGTGGTTTTCCAGTCGTATGAAAACAACTTCTCTGGAAAGCTTCCTGAAGGGTTTGGAAATATGCAAAATCTTAGTGCATTTTCAATCTATAGGAACAAGTTTTCAGGGGACTTTCCAGCGAATTTCGGCCGATTCGCACAGCTCAACAGCATTGACATATCGGAGAATAAATTTTCTGGGAACTTCCCCAGGTTCTTGTGTGAGAATAGGAAGCTGCAGTTCTTACTTGCTCTGGAAAATAGATTTTCAGGGGAGCTGCCACTTTCCTTTTCTGAGTGCAAGACACTGCAAAGATTAAGAATCAATAATAATCAAATGTCTGGAAAGATTCCAGATGGGGTATGGGCTCTTCCTTATGCAAAAATGATTGATTTCAGTGTTAATGAATTCAGTGGAGTCATATCCCCAAACATTGGGTTATCTACCAACTTGAGCCAATTGGTTTTGCTAAACAATAAGTTTTCAGGTAAGCTTCCACCAGAGCTTGGCAAGTTGACAAACTTAGAGAGGCTTCACTTGAGTAATAATGACTTCTATGGAGAAATACCTTCTGAAATTGGTTTTCTGAGGCAACTTTCATCATTACATCTGGAAAGAAACTGGTTGAATGGATCAATCCCACTAGAGATTGGCAATTGTGAAAGACTGGTGGACATAAATTTTACTCACAACTCTTTAAGTGGGAGCATTCCATCTTCATTTTCATTCATCAGCTCTTTGAACTCACTGGATCTCTCAAGCAACAAACTTACAGGTATAATCCCAGAGTACCTGGAGAAAATGAAACTAAGTTCGATAGATTTGTCGGGAAATCAGCTGTTTGGAAGAGTTCCTTCCAGTCTTCTGGCAATGAGTGGAGACAGAGCATTTCTGGACAACAAAGAACTCTGTGTTGATGAAAACTACAGAGAAAGGGTAAATACCAGTCTGAGTACTTGTACTGGAAAACATAGTCAGAAAGGGGTGTTTGAAGATAAACTTGTGTTTTTCAGTATCATAGTATCCATATTGGTTTGTGTATTAGCAGGGTTAGTGTTGGTAAGTTGTAACTACTTGAAGCTCGGTGGGACTGGCTTAGAGATCAGTAGTCCGGAGGGGGACCGAGAAGGGGCTCCAGAATGGAAAATCGCATCATTCCATCAAGTCGAATTTGATGCAGATGAAATATGCAGTTTCGAAGAAGATAACTTGATAGGGAGCGGAGGAACGGGAAAAGTTTATCGGTTGGATCTGAAGAAAAATGGCGGAACAGTGGCGGTTAAGCAACTCTGGAAAGGAGATGCAATGAAGGTTTTGGCAGCAGAAATGGAGATTTTGGGGAAGATAAGGCACATAAATATATTGAAGCTCTATGCCTGCTTAATGAGAGAAGGATCTAGTTATCTAGTTTTTGAATATATGGCTAATGGCAACTTGTGTGAAGCACTTCAAAGACAGATCAAAGGTGGACTGCCTGAATTGAACTGGTTTCAGAGGTACAGAATTGCCTTGGGAGCAGCAAGGGGAATTGCTTACTTGCACCATGATTGTTCACCACCTATAATTCATAGAGATATAAAATCAACAAACATACTTCTTGATGGAGATTATGAACCAAAAATTGCAGATTTTGGGGTTGCAAAAATTGCAGAGAAATTTCAAAGTGTTTCTGAGCACAGCTCTCTTGCTGGCACTCATGGTTATATTGCTCCTGAGCTAGCATATACTCCAAAAGTTTCAGAAAAGAGTGATGTGTACAGTTATGGTGTGGTGCTACTAGAATTAGTTACCGGAAGGAGACCGATCGAAGATGAATATGGAGAAGGAAAAGATATTGTGTATTGGGTCTCAACACACCTCGATGACCGTGAAAACGTCCTCAAGCTTCTAGACATCAAAGTTGCATCAGAAGTCGTCCAGAACAACATGATTAAAGTCCTGAAGATTGCTGTACTTTGCACGACAAAGCTTCCATCACTCCGCCCTTCAATGAGAGAGGTAGTGAAGATGCTTTTAGATGCTGATCCTTACTCTTCGTCAATGTCCCTGAACAACAGTTCAAATAAAAACATGAAGGATTTTGTTTAG 2934 40.7 MEKFPGCFLHSLLIFLFILSLFVTSLPLPTETQALLRFKENLKDPSGFLHSWVDSESPCGFSGITCDRVSGEVVEISLENKSLTGEISLSISALQSLTTLSLATNHISGELPYQLINCSNLRVLNLTDNEMVGKIPDLSQLRKLEVLDLSSNLFSGQFPIWVGNLTELVSLGLGENDFEADEIPESIGNLKNLTWLYLANAQLRGEIPESLYELKALQTLDLSRNKISGKISKSISKLQNLNKLELFVNNLTGEIPPEIANLTLLQEIDISANSLSGELPEEVGNLRNLVVFQSYENNFSGKLPEGFGNMQNLSAFSIYRNKFSGDFPANFGRFAQLNSIDISENKFSGNFPRFLCENRKLQFLLALENRFSGELPLSFSECKTLQRLRINNNQMSGKIPDGVWALPYAKMIDFSVNEFSGVISPNIGLSTNLSQLVLLNNKFSGKLPPELGKLTNLERLHLSNNDFYGEIPSEIGFLRQLSSLHLERNWLNGSIPLEIGNCERLVDINFTHNSLSGSIPSSFSFISSLNSLDLSSNKLTGIIPEYLEKMKLSSIDLSGNQLFGRVPSSLLAMSGDRAFLDNKELCVDENYRERVNTSLSTCTGKHSQKGVFEDKLVFFSIIVSILVCVLAGLVLVSCNYLKLGGTGLEISSPEGDREGAPEWKIASFHQVEFDADEICSFEEDNLIGSGGTGKVYRLDLKKNGGTVAVKQLWKGDAMKVLAAEMEILGKIRHINILKLYACLMREGSSYLVFEYMANGNLCEALQRQIKGGLPELNWFQRYRIALGAARGIAYLHHDCSPPIIHRDIKSTNILLDGDYEPKIADFGVAKIAEKFQSVSEHSSLAGTHGYIAPELAYTPKVSEKSDVYSYGVVLLELVTGRRPIEDEYGEGKDIVYWVSTHLDDRENVLKLLDIKVASEVVQNNMIKVLKIAVLCTTKLPSLRPSMREVVKMLLDADPYSSSMSLNNSSNKNMKDFV 977
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21909440 21914501 + MC04g1394 Mch4g1936 686648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1936 977 ProSiteProfiles Leucine-rich repeat profile. 528 549 IPR001611 GO:0005515(InterPro)
Mch4g1936 977 SMART serkin_6 681 960 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1936 977 FunFam Leucine-rich receptor-like protein kinase family protein 671 755 - -
Mch4g1936 977 Gene3D Ribonuclease Inhibitor 28 181 IPR032675 -
Mch4g1936 977 Gene3D Ribonuclease Inhibitor 313 594 IPR032675 -
Mch4g1936 977 FunFam Probable inactive receptor kinase RLK902 28 185 - -
Mch4g1936 977 Gene3D Ribonuclease Inhibitor 182 238 IPR032675 -
Mch4g1936 977 Gene3D Ribonuclease Inhibitor 239 312 IPR032675 -
Mch4g1936 977 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 756 971 - -
Mch4g1936 977 Gene3D Phosphorylase Kinase; domain 1 657 755 - -
Mch4g1936 977 FunFam LRR receptor-like serine/threonine-protein kinase 212 287 - -
Mch4g1936 977 Pfam Leucine Rich Repeat 217 238 IPR001611 GO:0005515(InterPro)
Mch4g1936 977 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515(InterPro)
Mch4g1936 977 Pfam Leucine Rich Repeat 456 478 IPR001611 GO:0005515(InterPro)
Mch4g1936 977 Pfam Leucine Rich Repeat 265 286 IPR001611 GO:0005515(InterPro)
Mch4g1936 977 Pfam Leucine Rich Repeat 240 262 IPR001611 GO:0005515(InterPro)
Mch4g1936 977 SMART LRR_typ_2 141 165 IPR003591 -
Mch4g1936 977 SMART LRR_typ_2 94 118 IPR003591 -
Mch4g1936 977 SMART LRR_typ_2 526 549 IPR003591 -
Mch4g1936 977 SMART LRR_typ_2 214 238 IPR003591 -
Mch4g1936 977 SMART LRR_typ_2 454 476 IPR003591 -
Mch4g1936 977 SMART LRR_typ_2 262 286 IPR003591 -
Mch4g1936 977 SMART LRR_typ_2 478 502 IPR003591 -
Mch4g1936 977 SUPERFAMILY Protein kinase-like (PK-like) 678 953 IPR011009 -
Mch4g1936 977 PRINTS Leucine-rich repeat signature 526 539 - -
Mch4g1936 977 PRINTS Leucine-rich repeat signature 217 230 - -
Mch4g1936 977 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524(InterPro)
Mch4g1936 977 ProSiteProfiles Protein kinase domain profile. 681 960 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1936 977 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515(InterPro)
Mch4g1936 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch4g1936 977 SUPERFAMILY RNI-like 255 569 - -
Mch4g1936 977 SUPERFAMILY L domain-like 55 291 - -
Mch4g1936 977 Gene3D Transferase(Phosphotransferase) domain 1 756 974 - -
Mch4g1936 977 FunFam Receptor-like protein kinase HSL1 288 594 - -
Mch4g1936 977 Pfam Protein kinase domain 682 951 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch4g1936 977 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Mch4g1936 977 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 17 954 IPR050647 -
Mch4g1936 977 Pfam Leucine rich repeat 504 562 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1936 Mch-Chr4:21909440 Mch6g2847 Mch-Chr6:29699103 4.68E-72 dispersed
Mch4g1936 Mch-Chr4:21909440 Mch8g0305 Mch-Chr8:2136812 3.04E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77356 PF00069 Pkinase 8.60E-48 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1936 - - - 0.0