Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1944 ATGATGAACTCCATGGGAATCTTTGAAGATATTGGATTTTGCCGAAATCTTGACTATTTTTCGGCACCTCCTGGTGAACAAGAGATGGCTCGGGAGCATGAACCTGAGGCCACTTTGGAGGAAGATTATAGCGATGAAGAGATGGATGTTGATGAGCTTGAGAGAAGGATGTGGAGAGACCGAATGCTTTTGAGGCGGCTCAAAGAACAAAACAAAGAGAAGGAAGGGACTGATAATTCAAAGCAGCGTCAGTCCCAGGAACAGGCCCGAAGGAAGAAGATGTCTCGAGCTCAAGATGGTATCCTGAAATATATGTTGAAAATGATGGAGGTTTGTAAAGCTCAAGGTTTCGTTTACGGGATCATTCCCGAGAAAGGAAAGCCAGTCAGTGGAGCTTCTGATAATCTTCGTGCCTGGTGGAAAGAGAAAGTCAGGTTCGATAGAAATGGCCCTGCAGCCATTGCTAAATATCAAGCTGACCATGCAATTCCTGGGAAGAACGATGACTGCAATACAGTGACATCCACACCTCACACTTTACAAGAACTCCAAGACACAACCCTTGGATCACTTTTGTCGGCTCTGATGCAGCACTGTGATCCACCGCAGAGGCGTTTTCCATTGGAGAAGGGAGCTTCCCCACCGTGGTGGCCCACTGGAAACGAAGAATGGTGGCCTGAATTGGGATTACCCAAGGACCAGGGGCCTCCCCCTTATAAGAAGCCCCATGATCTGAAAAAGGCTTGGAAAGTCAGTGTTCTCACTGCTGTGATTAAGCACATGTCTCCCGACATTGCCAAAATTCGCAAGCTTGTTCGTCAGTCTAAATGTTTGCAAGACAAAATGACTGCCAAGGAGAGTGCTACATGGCTGGCCATTGTAAACCAGGAAGAAGCACTGGCCAGGAAATTGTATCCCGATAAATGCCCACCTGTGGCGATTTGCGGGAGTGGATCTCTTTTAATCAGTGACACTAGTGATTACGATGTTGAAGGAATAGAAGATGAACCCCATGTCGAAGCAGAGGAAAACAAACCGCACGATCTCAGTTTCTTTAATATGGGGGCTTCTGGAGCTAGAGAGAGGCTTATGATGCCACCATTGGGACCTCAGATTAAGGAAGAATTCATGGAGAACAATTCAGACTTTATTCAAAAGAGAAAGCAGTTGACTGATGAGTCGAATACAATGATGAATCAGAAGATATATACTTGCGAGTATTCTCAATGCCCTTATAACAGTCAGCGCCTCGGGTTTCTCGACAGGACTTCAAGAAACAACCACCAGTTGAATTGCCCATTTAGGAGTGATTCTTCCCACATATTTGGCATGCCGAGCTTTCAAACCAACGATGACAAATCATCTCCAGTTCCTCCATCCTTCAACCACTCTAAGCCACCTTCTCGGCCAATGAACCAGAATCATCCACCCTTCAGAGTTTCAGGACTTGGACTTCCGGAAGATGGCCAGAAAATGATTTCTGACCTTCTGAGCTTCTACGATTCTAACCTTCAACATGACAAAGCTTTGAATTCTGGTAACGTTGTCGAAGCTAGAGAGGATCATCACAACACACAGCTGCAGAAATTCCAACTTCAAGTCGATGATAACTTGTATTGCCAAGGAGCAGCAATGGTAGGAACTAGCATGCCAATCCAGCAGCACCCTGATTTTTCTTCAACAAAAGTCCCATTTGAGGAGTACAAGGCATTCGATTCTCCATTCGGCATGTATCCCAACGATAACATCGCAGACTTCAGATTCGGTTCTCCATTTAACTTGGCATCCATTGATTATGCAGTCGACCCGCCATTGCCCAAGCAAGATACACCCTTGTGGTATCTCTGA 1848 45.73 MMNSMGIFEDIGFCRNLDYFSAPPGEQEMAREHEPEATLEEDYSDEEMDVDELERRMWRDRMLLRRLKEQNKEKEGTDNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGKNDDCNTVTSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGASPPWWPTGNEEWWPELGLPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEALARKLYPDKCPPVAICGSGSLLISDTSDYDVEGIEDEPHVEAEENKPHDLSFFNMGASGARERLMMPPLGPQIKEEFMENNSDFIQKRKQLTDESNTMMNQKIYTCEYSQCPYNSQRLGFLDRTSRNNHQLNCPFRSDSSHIFGMPSFQTNDDKSSPVPPSFNHSKPPSRPMNQNHPPFRVSGLGLPEDGQKMISDLLSFYDSNLQHDKALNSGNVVEAREDHHNTQLQKFQLQVDDNLYCQGAAMVGTSMPIQQHPDFSSTKVPFEEYKAFDSPFGMYPNDNIADFRFGSPFNLASIDYAVDPPLPKQDTPLWYL 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21943136 21947384 - MC04g_new0544 Mch4g1944 686656

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1944 615 FunFam Ethylene insensitive 3-like 1 83 161 - -
Mch4g1944 615 Gene3D - 83 163 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Mch4g1944 615 FunFam Ethylene insensitive 3-like 1 171 308 - -
Mch4g1944 615 Coils Coil 36 87 - -
Mch4g1944 615 Pfam Ethylene insensitive 3, DNA-binding domain 51 298 IPR047091 GO:0003700(InterPro)
Mch4g1944 615 Coils Coil 373 393 - -
Mch4g1944 615 MobiDBLite consensus disorder prediction 67 94 - -
Mch4g1944 615 MobiDBLite consensus disorder prediction 443 459 - -
Mch4g1944 615 SUPERFAMILY DNA-binding domain of EIN3-like 177 301 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Mch4g1944 615 MobiDBLite consensus disorder prediction 443 474 - -
Mch4g1944 615 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 9 604 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Mch4g1944 615 MobiDBLite consensus disorder prediction 24 50 - -
Mch4g1944 615 Gene3D - 175 308 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1944 K14514 - - csv:101214396 1111.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1944 Mch-Chr4:21943136 Mch6g1072 Mch-Chr6:7712561 1.32E-248 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g1072 . 1 627 EIL Transcription Factor Family AT2G27050 58.1 1.1e-190 663.3
Mch4g1944 . 1 505 EIL Transcription Factor Family AT2G27050 62.6 2.8e-170 595.5
Mch6g1072 . 33 333 EIL Transcription Factor Family AT1G73730 63.1 7.9e-106 381.3
Mch4g1944 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 2.2e-103 373.2
Mch10g0690 . 24 271 EIL Transcription Factor Family AT1G73730 54.5 2.5e-75 280.0
Mch6g1072 . 2 627 EIL Transcription Factor Family AT3G20770 62.6 3.8e-213 738.0
Mch4g1944 . 7 505 EIL Transcription Factor Family AT3G20770 63.6 1.3e-173 606.7
Mch10g0690 . 24 364 EIL Transcription Factor Family AT5G10120 55.7 2.7e-102 369.4
Mch4g1944 . 32 300 EIL Transcription Factor Family AT5G10120 58.1 3.8e-85 312.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43241 PF04873 EIN3 2.60E-131 No_clan Mch TF