Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1948 ATGGGGATTCAAACTATGGGGTCTCAGGCCGGAGGTGATCCAAATGGCAAACAATCACAATTCCAGCCATTGGTTCGTCAAAACTCGCTATATAGTCTCACACTTGATGAGGTCCAAAATCAGTTGGGTGATCTAGGAAAACCATTAATCAGCATGAACCTTGACGAGCTTCTTAAGAATGTGTGGACTGCTGAGGCCAACCAGACCGCTGGTAAGGACAATGAGGATGATACTGTGTTGGCCCATCAAACATCCTTACAACGTCAGGCTAGTCTTTCATTGAACGGTGCTCTGAGTAAAAAGACTGTTGATGAGGTGTGGAGAGATATTCAGCAAAGCAAAAACAGTGAGGAGAAGAAGTCTCGAGAACGGCAGCCCACCTTAGGAGAGATGACATTGGAAGATTTTCTGGTGAAAGCAGGGGTCGTCGCTGAGACGTTGTCGGATAATAAGAAAGATGCGGGTCCTGTTGTTGAAATCGATGCGAATATCACACCCCAGTTTCCGCAACAAGGGCAGTGGATACAGTACCCTCAACCTCAATATCAGCAACAAGCAGCAATGATTTACATGTCAGGTCAGCCCATTACCCAACCACTACATGTGGGGACTGGTGGTGTGATCGATGTTCCATATGTGGACAACCAGTTGGCATTACCCACACCTTTGGTGGGAGCTTTATCTGACACACAGACATCTGGAAGGAAAAGGGGAGCACCCGAAGACGTGATTGAGAAAACTGTCGAGCGTAGGCAAAAGAGGATGATAAAGAATCGGGAATCTGCTGCTCGTTCACGAGCAAGGAAGCAGGCTTATACCAATGAACTGGAGAACAAAGTTTCACGTTTGGAGGAGGAAAATGAAAGGCTCAGGAAACGGAAGGAACTGGAGAAGATGCTACCGTTGGCTCCCTCGCCCGAGCCAAAGTACCAGCTTCGGAGAACATCGTCAGCGCCGTTCTAA 963 47.77 MGIQTMGSQAGGDPNGKQSQFQPLVRQNSLYSLTLDEVQNQLGDLGKPLISMNLDELLKNVWTAEANQTAGKDNEDDTVLAHQTSLQRQASLSLNGALSKKTVDEVWRDIQQSKNSEEKKSRERQPTLGEMTLEDFLVKAGVVAETLSDNKKDAGPVVEIDANITPQFPQQGQWIQYPQPQYQQQAAMIYMSGQPITQPLHVGTGGVIDVPYVDNQLALPTPLVGALSDTQTSGRKRGAPEDVIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKELEKMLPLAPSPEPKYQLRRTSSAPF 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 21971706 21977715 - MC04g_new0548 Mch4g1948 686660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1948 320 Gene3D - 248 301 - -
Mch4g1948 320 MobiDBLite consensus disorder prediction 295 320 - -
Mch4g1948 320 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 248 293 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1948 320 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 248 300 - -
Mch4g1948 320 SMART brlzneu 246 318 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1948 320 SUPERFAMILY Leucine zipper domain 250 295 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1948 320 MobiDBLite consensus disorder prediction 1 23 - -
Mch4g1948 320 Pfam bZIP transcription factor 250 297 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1948 320 CDD bZIP_plant_BZIP46 250 304 - -
Mch4g1948 320 Coils Coil 266 300 - -
Mch4g1948 320 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 253 268 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch4g1948 320 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 26 318 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1786 Mch-Chr10:17619768 Mch4g1948 Mch-Chr4:21971706 3.12E-17 dispersed
Mch11g0801 Mch-Chr11:5395987 Mch4g1948 Mch-Chr4:21971706 9.68E-17 dispersed
Mch2g0250 Mch-Chr2:1857586 Mch4g1948 Mch-Chr4:21971706 2.44E-30 dispersed
Mch4g1890 Mch-Chr4:21569061 Mch4g1948 Mch-Chr4:21971706 7.49E-15 dispersed
Mch4g1948 Mch-Chr4:21971706 Mch6g1051 Mch-Chr6:7523669 2.42E-62 dispersed
Mch4g1948 Mch-Chr4:21971706 Mch8g0681 Mch-Chr8:4859697 1.46E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43242 PF00170 bZIP_1 3.40E-13 CL0018 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1948 K14432 - csv:101213915 518.85