Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1953 ATGGATTCTCCAACCCCAAAAGAGAGCTCGGCCAATATCGAACTCGCTGATTGCACTTCCCCGGGGCCAAATCAACCGTCGCTGCACTCCAAGTCCTCGATTCAGGAAGTGGGTTCTAGTGATTCTGGATCGAAGCCTGCGCCACCACGGTCTCGAGGTGCCGATTCCGGACTCCAGAACGAGACGAACGACATAGATGCGAGGCTGATTTACATCGGTGATCATGAAAAGACGAACGGAAATTGTGAGTTCGCTGGAAATTCGATTCGTTTTGGGAAGTATTCGATTCTAACTTTTATGCCCAGGAATCTGTTTGAACAATTTCATAGAGTTGCTTATATTTATTTCCTTGTTATTGCGGTCCTTAATCAACTTCCCCAGCTTGCTGTTTTTGGTTGGGGAGTCTCTATTTTTCCTTTAGCTCTTGTGTTGCTAGTTACAGCAGTTAAGGATGCATATTTTGACTGGAGAAGGCATCATACTGATAAAATTGAGAACAATCGGTTGGCTTCAGTTTTGGTCAATGGTAATTTTCAGCCCAAGAAATGGAAGGATATTAGAGTTGGTGAGATAATTAAAATTGGTGCTGACGACACCATTCCTTGTGATATGGTGCTTCTCTCTACCAGAGATTCCACAGGGGTTGCGTTTGTGCAAACTCTGAATTTGGACGGGGAATCAAATTTGAAAACCAAGTACGCCAAACAAGAGACAATGTTGAAAATGCCCGACGAGGAGAAGATTGATGGGTTGATTAAATGTGAGAAACCCAATAGGAATATCTATGGATTTCATGCTAATATGGAGATTGATGGGAAGCGTCTTTCTCTTGGACCTGCGAACGTAGTTCTTCGTGGCTGTGAGCTCAAGAAAACTAGCTGGGCTGTTGGTGTTGCTGTATATGCTGGCAGCGAGACCAAAATCATGCTTAACAGTTCCGAAGCTCCATTGAAAAGAAGCGGACTCGAGAGCCGTATGAACGTGCAGATTTTTATACTCTCTTTGTTTCTTGTTGCTTTGTGTACAGTTGTTTGTGTTTGTGCTGCTGTTTGGTTCTCCAGGAAGGGGCAAGATTTGGACATTTTACCTTATTTTAGAAAGAAGGATTTCTCAAAAGACCCACCTGAAACCTATAATTACCATGGCTGGGGATTGGATGTATTTTTTGTATTCCTCATGTCAGTCATTGTGTTTCAGATCATGATCCCCATTTCACTGTACATTTCAATGGAGCTTGTTCGCCTTGGCCAGGCTTATTTCATGATCCGGGACACCCAAATGTATGATGAAACATCAAATTTAAGATTTCAGTGCCGTCCGTTGAACATAAATGAGGATTTAGGACAAATAAGGTATGTATTTTCGGACAAAACGGGTACCCTTACTGAGGAGAAGATGGAATTTCGATGTGCCAGCATCTGGGGGGTCGATTATGGAGGTGAAATTACCGATCCCCTAGGCGAGCAAATTGGACACTCTGTTCAAGTGAATGGAAAGGTTTTGAGGCCAAAAATGGCAGTCAAAATGGATTCAAAGCTTCTACAGTTATCGAAAAGTGGGAGGCACACCACGGAAGGAAGATATAGTCATGATTTCTTCCTCGCATTAGCTGCTTGCAATACCATCATTCCTCTCATTACCGAAACTTCTAATCCTTCACTGCAATTAATTGACTACCAAGGGGAGTCTCCAGACGAACAGGCATTGGTTTATGCTGCTGCGGCGTATGGTTTTATGCTAGTCGAACGAACTTCTGGCCATATAGTTATTGACATACATGGTGAACAGCAAAGGTATAACGTTTTGGGAATGCACGAGTTCGATAGCGAGAGGAAGCGGATGTCGGTGATACTTGGGTGTCCTGATATGACCTTTAAGGTATTTGTAAAAGGTGCCGACAGCTCCATGTTCAAGGTGATGGATGAAACTCCAAACATGGATATCATTCAAGCAACTAGAGCAAATCTTCATTCGTACTCATCAAAGGGTCTCAGGACACTGGTTATTGGGATGAAAGAACTCAGTCCTTCTGACTTCAAGAAATGGCACTTGATGTTTGAGGAAGCAAGCACCGCTCTAGTCGGCAGGGCCATCCAGCTTCGCAAGGTTGCAAGCGACATAGAAAACAATCTGTGCATATTGGGTGCCTCAGGCATTGAAGATAAGTTGCAAAAAGGTGTGCCAGAAGCCGAAGCTTTAAGAAAGGCAGGAATTAAAGTATGGGTTTTGACTGGGGACAAGCAAGAAACTGCCATATCAATTGGTTATTCCTCAAGGCTCTTAACAAACAATATGACCAAAATTAGAATTAATAGCAACTCGGCAGAATCATGCAGAAGGATTTTAGAAAATGCAATAATCATGTTGAAGAAGTTTGCTAGTGTGTCAGGGGTTACTTTAGATAGTGGAAGAAGCACTGAAGTTGTCACGACTTCAGTTGCCTTGATTATTGATGGTACCAGCCTTGTTTATATTCTCAATCGCGATCTCGAGGAACAGCTTTTCGAACTAGCGTCAATCTGTTCAGTTGTGTTATGTTGTCGGGTAGCCCCATTGCAAAAAGCTGCAATGGTTGCTCTAGTCAAGGGAAGGACTTCTGACATGACACTTGCCATCAGTGACGGCGGGAACGACGTGTCAATGATCCAAATGGCAGATGTGGGTGTCGGTATGAGTGGTCTGGTGGGTCAACAAGCTGTCATAGCATCAGATTTTGCCATTGGACAATTTAGATTCTTGGTTCCTCTTCTATTGGTCCATGGACATTGGAATTACCGGCGGATGGGCTACATGATTTACAACTTTTACAGAAATGCAGTATTTGTGCTTGTCTTATTTTGGTATGTGCTCTTTACCAGTTTCTCGTTGATAACCGCAATCAACCAATGGAATAATGCGCTCTACTCTATTATCTATACTGTTTTTCCCACCATTGTTGTTGGAATTCTTGACAAGGACCTCGGTAGAAGGACTCTTCTTAGTTACCCTCAGCTTTATGGGGCTGGCCACAGGCAGGAGAGTTACAACTCTGGATTGTTTTGGTTAACAATGATTGATACTGTGTGGCAAAGTATTGCTATTTTCTTCATCCCCCTCCTTGCATACTGGGCTACCACCATCGACGCTTCGAGCCTCGGAGATCTCTGGCTACTTGCCGTGGTAATAGTCGTTAACTTGCACTTAGCGATGGATGTTGTTCGATGGTATTCCATCACCCATGTTGTGATCTGGGGATCCACTCTCGCAACTGTCATTTGTGTCATTGTACTTGATTCAGTACCGTCACTTCCCAATTACTGGGCGATATATCATGTGGCAGGCACGATGCCATTTTGGCTATGTTTGTTAGTGATCATCGTAGTAGCATTACTTCCTCGTTTTGTTGTAAAACACTTGTATCAGTATTACAATCCATGTGACATCCAAATAGCAAGGGAGGCAGATAAATTTGGAACGATAAGAGAGTTGGGAGTTGTACAAACAGAGGTGATCCCAGGCCTCAACAACCCTTCACAAGTA 3519 43.36 MDSPTPKESSANIELADCTSPGPNQPSLHSKSSIQEVGSSDSGSKPAPPRSRGADSGLQNETNDIDARLIYIGDHEKTNGNCEFAGNSIRFGKYSILTFMPRNLFEQFHRVAYIYFLVIAVLNQLPQLAVFGWGVSIFPLALVLLVTAVKDAYFDWRRHHTDKIENNRLASVLVNGNFQPKKWKDIRVGEIIKIGADDTIPCDMVLLSTRDSTGVAFVQTLNLDGESNLKTKYAKQETMLKMPDEEKIDGLIKCEKPNRNIYGFHANMEIDGKRLSLGPANVVLRGCELKKTSWAVGVAVYAGSETKIMLNSSEAPLKRSGLESRMNVQIFILSLFLVALCTVVCVCAAVWFSRKGQDLDILPYFRKKDFSKDPPETYNYHGWGLDVFFVFLMSVIVFQIMIPISLYISMELVRLGQAYFMIRDTQMYDETSNLRFQCRPLNINEDLGQIRYVFSDKTGTLTEEKMEFRCASIWGVDYGGEITDPLGEQIGHSVQVNGKVLRPKMAVKMDSKLLQLSKSGRHTTEGRYSHDFFLALAACNTIIPLITETSNPSLQLIDYQGESPDEQALVYAAAAYGFMLVERTSGHIVIDIHGEQQRYNVLGMHEFDSERKRMSVILGCPDMTFKVFVKGADSSMFKVMDETPNMDIIQATRANLHSYSSKGLRTLVIGMKELSPSDFKKWHLMFEEASTALVGRAIQLRKVASDIENNLCILGASGIEDKLQKGVPEAEALRKAGIKVWVLTGDKQETAISIGYSSRLLTNNMTKIRINSNSAESCRRILENAIIMLKKFASVSGVTLDSGRSTEVVTTSVALIIDGTSLVYILNRDLEEQLFELASICSVVLCCRVAPLQKAAMVALVKGRTSDMTLAISDGGNDVSMIQMADVGVGMSGLVGQQAVIASDFAIGQFRFLVPLLLVHGHWNYRRMGYMIYNFYRNAVFVLVLFWYVLFTSFSLITAINQWNNALYSIIYTVFPTIVVGILDKDLGRRTLLSYPQLYGAGHRQESYNSGLFWLTMIDTVWQSIAIFFIPLLAYWATTIDASSLGDLWLLAVVIVVNLHLAMDVVRWYSITHVVIWGSTLATVICVIVLDSVPSLPNYWAIYHVAGTMPFWLCLLVIIVVALLPRFVVKHLYQYYNPCDIQIAREADKFGTIRELGVVQTEVIPGLNNPSQV 1173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22005042 22009386 + MC04g1402 Mch4g1953 686665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1953 1173 Pfam E1-E2 ATPase 170 408 - -
Mch4g1953 1173 CDD P-type_ATPase_APLT_Dnf-like 86 1031 - -
Mch4g1953 1173 Pfam Phospholipid-translocating P-type ATPase C-terminal 901 1138 IPR032630 -
Mch4g1953 1173 FunFam Phospholipid-transporting ATPase 714 912 - -
Mch4g1953 1173 Gene3D - 557 690 IPR023299 GO:0000166(InterPro)
Mch4g1953 1173 NCBIfam phospholipid-translocating P-type ATPase 84 1146 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Mch4g1953 1173 FunFam Phospholipid-transporting ATPase 558 691 - -
Mch4g1953 1173 FunFam Phospholipid-transporting ATPase 142 311 - -
Mch4g1953 1173 PRINTS P-type cation-transporting ATPase superfamily signature 872 891 - -
Mch4g1953 1173 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
Mch4g1953 1173 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 62 1132 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Mch4g1953 1173 MobiDBLite consensus disorder prediction 1 46 - -
Mch4g1953 1173 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 727 IPR023299 GO:0000166(InterPro)
Mch4g1953 1173 NCBIfam HAD-IC family P-type ATPase 840 955 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch4g1953 1173 SUPERFAMILY Calcium ATPase, transmembrane domain M 86 1137 IPR023298 -
Mch4g1953 1173 Pfam Cation transport ATPase (P-type) 562 638 - -
Mch4g1953 1173 SUPERFAMILY HAD-like 449 927 IPR036412 -
Mch4g1953 1173 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
Mch4g1953 1173 SFLD p-type atpase 438 923 IPR044492 -
Mch4g1953 1173 SFLD Haloacid Dehalogenase 438 923 - -
Mch4g1953 1173 Gene3D - 148 313 - -
Mch4g1953 1173 MobiDBLite consensus disorder prediction 1 60 - -
Mch4g1953 1173 Pfam Phospholipid-translocating ATPase N-terminal 70 136 IPR032631 -
Mch4g1953 1173 Gene3D - 710 912 IPR023214 -
Mch4g1953 1173 SUPERFAMILY Calcium ATPase, transduction domain A 167 309 IPR008250 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1953 Mch-Chr4:22005042 Mch9g2189 Mch-Chr9:22482405 2.35E-201 dispersed
Mch4g1952 Mch-Chr4:22001069 Mch4g1953 Mch-Chr4:22005042 3.53E-33 tandem
Mch4g1953 Mch-Chr4:22005042 Mch4g1954 Mch-Chr4:22020178 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1953 K14802 - csv:101212953 1867.43