Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g1954 ATGGCGTCGGAGCGGCCGCTTTTGATTGTATCTCCTAGAACGCCCAAAACCCAGCAGCTTCCTCCCGATTCTATACTCCGCGATCTACCGAAACCGAAGTCCGAGCGGTCCGGATCGTTCTCCGCCATGGATTCTCGGAGCCCTAATGAAAACTCGGCGAGTGCTGAACTTGGCTACCGTTCTTTCTCGCGGCGGAGTCAATCGTCGCTGCAATCGAAGTCCTCGATTCGGGAAGTGGGTTCTAGTGAGTTCGGATCGAGGCCTGTTCGTCATGGGTCTCGAGGCGCCGATTCTGAAGCACTGAGCATATCCCAGAAGGAGATCAGTGACGAGGATGCGAGGTTGATTTACGTCGACGATCCTGAAAAGACGAACGAGAAGTTTGAGTTCGCTGGAAATTCGATTCGCACCGGCAAGTATTCGATTATAACTTTTCTGCCCAGGAATCTGTTCGAACAGTTTCATAGAATTGCTTATATATATTTCCTTGTTATTGCGGTTCTTAATCAACTTCCCCAGCTTGCCGTTTTTGGTCGGGGAGTCTCCATTTTGCCTTTAGCTTTTGTGCTGCTAGTTACAGCAGTTAAAGATGCATATGAGGATTGGAGAAGGCATCGTTCTGATAAAATTGAGAACAATAGGTTAGCTTCTGTTTTGGTAAATGGTGAGTTTCAACTAAAGAAATGGAAGGATATTAGAGTTGGTGAGATAATTAAGATTGGTGCCAATGGTACAATTCCTTGTGATATGGTGCTTCTCTCTACCAGTGATTCCACTGGGGTTGCCTATGTGCAGACTCTGAATTTGGATGGGGAATCGAATTTAAAAACCAGGTACGCGAAACAAGAGACAATGTCGAAAATGCCCGACAAGGAGAAGATTGATGGATTGATTAAATGTGAGAAACCCAATAGGAATATCTATGGATTTCATGCTAATATGGAGATTGATGGGAAGCGTCTTTCTCTTGGACCTCCAAACATAGTTCTTCGTGGCTGTGAGCTCAAGAATACTAGCTGGGCTGTTGGTGTTGCTGTATATGCTGGCCGGGAGACCAAAGCCATGCTTAACAGTTCCGGAGCTCCATCGAAGAGAAGCCGACTCGAGACTCGCATGAATGTGGAGATTATTATGCTCTCTTTGTTTCTCATTGCTTTGTGTATAGTTGTTTGTGTTTGTGCTGCTGTTTGGTTCATCAGAAAGGGGGAAGATTTGGACATTTTACCTTATTTCAGAAAGGAGGATTTCTCAGAAGACCCACCTGAAACCTATAATTACTATGGATGGGGATTGGATTCGTTTTTTGTATTCCTCATGTCAGTCATTGTGTTTCAGATTATGATCCCTATTTCGCTATACATTTCAATGGAGCTTGTTCGGGTTGGCCAGGCTTATTTTATGATCCGGGACACCCAAATGTATGATGAAACATCAAATTCAAGATTTCAGTGCCGTGCTTTGAACATAAATGAGGATTTAGGACAAATAAGGTATGTATTTTCGGACAAAACGGGTACCCTTACTGAGAATAAGATGGAATTTCGATGTGCCAGCATCTGGGGAGTCGATTATGGAGGCGAAATTACCGATCCCTTAGGCGAGCAAATTGGACACTCTGTTCAAGTGAACGGAAAGGTTTTGAGGCCAAAAATGGCAGTCAAAACGGATCCGAAGCTTCTACAGTTATCGAAAAGTGGAAGGCACACCAGGGAAGGGAGATATATTCATGATTTCTTCCTCGCATTGGCTGCTTGCAATACCATTGTTCCTCTCATTACCGAAACTTCCGATCCTTCACTGCAATTAATTGACTACCAAGGGGAGTCTCCAGACGAACAGGCATTGGTTTATGCTGCTGCGGCGTATGGTTTTATGCTAGTCGAACGAACTTCTGGCCATATAGTTATTGACATACATGGTGAACAGCAAAGGTATAACGTTTTGGGAATGCACGAGTTTGATAGCGATAGGAAGCGGATGTCGGTGATACTCGGATGTCCTGATATGACCTTTAAAGTATTTGTAAAAGGGGCTGACAGCTCCATGTTCAAGGTGATGGGTGAAACTCTAAACATGGATATCATTCAAGCAACCAAGGCAAATCTTCATTCGTACTCATCAAAGGGTCTCAGGACACTGGTTATTGGGATGAAAGAACTCAGTCCTTCCGACTTCGAGAAATGGAACTTGATGTTTGAGGAAGCAAGCACCGCTCTAGTCGGCAGGGCCATCCGGCTTCGCAAGGTTGCGAGCAACATAGAAAACAATCTGTGCATATTGGGTGCCTCAGGCATTGAAGATAAGTTGCAAAAAGGTGTGCCAGAAGCCATAGAAGCTTTAAGAAAGGCAGGAATTAAAGTATGGGTTTTAACTGGGGACAAGCAAGAAACTGCCATATCAATTGGTTACTCCTCTAGGCTCTTAACAAACAAGATGACCCAAATTATAATTAACAGCAACTCGGTGGAATCATGTAGAAGGAGCTTAGAAGATGCAATGATCATGTCGAAGAGGCTTGCTACTATGTCTGCAGTTACGGTGGACGGTGGAAGAAGCACTGAAGTTGTCACGACTTCGGTTGCGTTGATCATTGATGGTAGCAGCCTTGTTCATATTCTCGACAATGATCTTGAAAAACAGCTCTTTCAACTATCTTGTAACTGTTCGGTGGTGTTATGTTGTCGGGTCGCCCCATTGCAGAAAGCTGGAATTGTTGCTCTTGTCAAGCGAAGGACTTCTGACATGACACTTGCCATTGGTGATGGCGCGAATGACGTGTCAATGATCCAAAAGGCGGATGTGGGTGTCGGTATCAGTGGTCTTGAGGGTCGACAAGCTGTCATGGCTTCGGATTTTGCCATGGGACAATTTCGATTCTTGGTTCCTCTTCTATTGGTCCATGGACATTGGAATTACCAGCGGATGGGCTACATGATCCTGTACAATTTTTACAGAAATGCAGTGTTTGTGCTTGTTTTGTTTTGGTACGTGCTCTTCACCGGTTTTTCATTGACGACGGCGATCAACCAATGGAGCAGTGTGCTCTACTCTATAATCTATACTTGTTTGCCCACAATTGTTGTTGGAATTCTTGACAAGGACTTAGGAAGAAGGACTCTTCTTAGTCACCCTCAACTCTATGGGGCTGGCCATAGACAGGAGAATTACAACTCTAGATTGTTTTGGTTAACAATGGTTGACACTGTGTGGCAAAGCATTGCTATTTTCTTCATCCCCCTATTTGCATACTGGGCTACCACCATCGACATTTCGGGCCTCGGAGATCTCTGGCTGCTCGCCACGGTCATCGTCGTCAACTTGCACTTGGCAATGGACGTCATTCGATGGTATACCATCACCCACGCCGTCATTTGGGGGTCCACTCTCGCAACTGTCATTTGTGTCATTGTTCTTGATTCGATACTGTCGCTTCCTGGTTTCTGGGCGATACATCACGTGGCGGGCACGGGGGATTTTTGGCTATGTTTGTTAGCGATCGTCGTAGTAGCATTACTACCCCGTTTCGTCGTGAAATACCTATATCAGTATTACAGGCCATGTGACATCCAGATAGCAAGAGAGGCTGATAAATTTGGAAGGACAAGAGAGCTGGGAGTTGTACAAACAGAGATGATCCCAGTCCTCAACAATCCTTCACAAGTATGA 3666 44.98 MASERPLLIVSPRTPKTQQLPPDSILRDLPKPKSERSGSFSAMDSRSPNENSASAELGYRSFSRRSQSSLQSKSSIREVGSSEFGSRPVRHGSRGADSEALSISQKEISDEDARLIYVDDPEKTNEKFEFAGNSIRTGKYSIITFLPRNLFEQFHRIAYIYFLVIAVLNQLPQLAVFGRGVSILPLAFVLLVTAVKDAYEDWRRHRSDKIENNRLASVLVNGEFQLKKWKDIRVGEIIKIGANGTIPCDMVLLSTSDSTGVAYVQTLNLDGESNLKTRYAKQETMSKMPDKEKIDGLIKCEKPNRNIYGFHANMEIDGKRLSLGPPNIVLRGCELKNTSWAVGVAVYAGRETKAMLNSSGAPSKRSRLETRMNVEIIMLSLFLIALCIVVCVCAAVWFIRKGEDLDILPYFRKEDFSEDPPETYNYYGWGLDSFFVFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDTQMYDETSNSRFQCRALNINEDLGQIRYVFSDKTGTLTENKMEFRCASIWGVDYGGEITDPLGEQIGHSVQVNGKVLRPKMAVKTDPKLLQLSKSGRHTREGRYIHDFFLALAACNTIVPLITETSDPSLQLIDYQGESPDEQALVYAAAAYGFMLVERTSGHIVIDIHGEQQRYNVLGMHEFDSDRKRMSVILGCPDMTFKVFVKGADSSMFKVMGETLNMDIIQATKANLHSYSSKGLRTLVIGMKELSPSDFEKWNLMFEEASTALVGRAIRLRKVASNIENNLCILGASGIEDKLQKGVPEAIEALRKAGIKVWVLTGDKQETAISIGYSSRLLTNKMTQIIINSNSVESCRRSLEDAMIMSKRLATMSAVTVDGGRSTEVVTTSVALIIDGSSLVHILDNDLEKQLFQLSCNCSVVLCCRVAPLQKAGIVALVKRRTSDMTLAIGDGANDVSMIQKADVGVGISGLEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTGFSLTTAINQWSSVLYSIIYTCLPTIVVGILDKDLGRRTLLSHPQLYGAGHRQENYNSRLFWLTMVDTVWQSIAIFFIPLFAYWATTIDISGLGDLWLLATVIVVNLHLAMDVIRWYTITHAVIWGSTLATVICVIVLDSILSLPGFWAIHHVAGTGDFWLCLLAIVVVALLPRFVVKYLYQYYRPCDIQIAREADKFGRTRELGVVQTEMIPVLNNPSQV 1221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22020178 22025132 + MC04g1403 Mch4g1954 686666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g1954 1221 SFLD p-type atpase 484 970 IPR044492 -
Mch4g1954 1221 FunFam Phospholipid-transporting ATPase 604 737 - -
Mch4g1954 1221 SUPERFAMILY HAD-like 487 960 IPR036412 -
Mch4g1954 1221 MobiDBLite consensus disorder prediction 38 81 - -
Mch4g1954 1221 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 507 765 IPR023299 GO:0000166(InterPro)
Mch4g1954 1221 MobiDBLite consensus disorder prediction 1 103 - -
Mch4g1954 1221 Gene3D - 604 741 IPR023299 GO:0000166(InterPro)
Mch4g1954 1221 NCBIfam HAD-IC family P-type ATPase 889 1003 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Mch4g1954 1221 Gene3D - 187 357 - -
Mch4g1954 1221 Pfam Phospholipid-translocating ATPase N-terminal 116 182 IPR032631 -
Mch4g1954 1221 Gene3D - 756 959 IPR023214 -
Mch4g1954 1221 FunFam Phospholipid-transporting ATPase 759 959 - -
Mch4g1954 1221 ProSitePatterns E1-E2 ATPases phosphorylation site. 502 508 IPR018303 -
Mch4g1954 1221 PRINTS P-type cation-transporting ATPase superfamily signature 500 514 - -
Mch4g1954 1221 PRINTS P-type cation-transporting ATPase superfamily signature 919 938 - -
Mch4g1954 1221 CDD P-type_ATPase_APLT_Dnf-like 132 1079 - -
Mch4g1954 1221 SFLD Haloacid Dehalogenase 484 970 - -
Mch4g1954 1221 FunFam Phospholipid-transporting ATPase 188 357 - -
Mch4g1954 1221 NCBIfam phospholipid-translocating P-type ATPase 130 1194 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Mch4g1954 1221 SUPERFAMILY Calcium ATPase, transduction domain A 213 354 IPR008250 -
Mch4g1954 1221 Pfam Cation transport ATPase (P-type) 608 684 - -
Mch4g1954 1221 Pfam Phospholipid-translocating P-type ATPase C-terminal 947 1186 IPR032630 -
Mch4g1954 1221 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 104 1186 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Mch4g1954 1221 SUPERFAMILY Calcium ATPase, transmembrane domain M 130 1186 IPR023298 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0139 Mch-Chr4:921730 Mch4g1954 Mch-Chr4:22020178 5.08E-171 dispersed
Mch4g1952 Mch-Chr4:22001069 Mch4g1954 Mch-Chr4:22020178 6.67E-31 dispersed
Mch4g1954 Mch-Chr4:22020178 Mch9g2189 Mch-Chr9:22482405 3.60E-218 dispersed
Mch4g1953 Mch-Chr4:22005042 Mch4g1954 Mch-Chr4:22020178 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g1954 K14802 - csv:101212953 2143.62