Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2000 ATGGCAGCGCCAAAGCCACGCACCAGTCGCTCCAAGTCTCTCAGGGATGCTCCTGATTCGGAGAAGATGGACGGTGCCTATAGCTGGGACGCCCTCGAATGGACCAAGATTGAGCACGTTTCGCGGTCTGTTTCGCGTGTGAAATTGGATTGCTTGCTTGAAGCGGAGGAAGTCATTGCTGAGGGCTATGGTGTTGTTCTTGTGAATACCGATGAGGCGGGTACCTTGTTTGTAACCAATTTTCGTCTTCTATTTCTGAGTGAAGGAACGATGGATGTTATTGCCCTTGGGACTATACCACTGGCCACAATTGAAAAATTCAACAAAATAGTTGTGAAGATGAATTCTGTCTCTCGCCAATCTGAAAAGTCTCCAGCTCGACGACTTCTTCAGGTCATTGGAAAAGACATGAGAATTATTGTCTTTGGTTTTCGTCCAAGAACAAAACAGAGGCGTAAAGTATATGATGGATTATTGAGTTGTATGAAGCCTGCAAGAATATGGGATCTATATGCATTCAAGTCCGGGCCATTCAAGTACAGTAATACAGACCCAAAAGTTCGCTTGCTAAATGAGTATTTTCGACTTCTTGGAAAGAGCTCCCTCTGGGCATCAATGAGTATGATTGAAGATGGATCATTTACATTGTCCAATGAGTTGTGGAGAATAACTAACATCAATTCCAGTTATGCTCTGTGTCAGAGTTATCCATTTGCATTGGTTGTACCAAAGCACATTAGTGATGAAGAAATGTTGCAGGCTTCTACCTTCCGGGCTAGATGCCGTTTGCCTGTTGTTTCGTGGTGCAATCCTGGTACTGGAGCTGTTCTTGCACGTTCATCTCAACCTTTAGTTGGTCTTATGATGAATATGAGAAGTAATACTGATGAAAAGCTTGTTGCTGGACTTTGTTCCCATCTCGCTGGTGCTCATGGGTCACCTCGTAGGAAGCTTTATATAGCTGATGCAAGGCCTAGAAAAAATGCTTTAGCAAACGGAGCTATGGGAGGTGGCTCAGAATCATCATCAAATTATTTCCAATCTGAGATAGTTTTTTTTGGGATTGACAACATTCATGCAATGAGAGAAAGTCTTACGCGGCTCAGAGAGTACTTGGATACCCATGGTGCTAAATCATCCGATGGAATGTCCTCATATTTGAGACATGGTGGATGGACTTGGGGTGGAGGTAATCTTAGTAGCATGTCTGCATCTGTATCAACTCTTGGAGATAGTGGCTGGTTAATCCATGTTCAAAGCGTCTTGGCTGGTTCAGCATGGATTGCTGCACGTGTTGCTTTGGAAGATGCAACGGTTCTGGTTCACTGCAGTGATGGCTGGGACAGAACAACACAACTGGTTTCACTTGCTAGCTTGCTACTTGATCCTTATTATCGGACGTTCACTGGATTTCAGGCACTGATTGAAAAGGATTGGCTGGCATTTGGTCATCCTTTCTCAGATCGAGCTGGCATGCCAACCGTATCGGGAAGTGGTAACTTGCAACTCGCTCGGCAGTCTTCTACTGGAAGTTTTTCATCTTCACCTATGCGTCAGCCACCGGGATCATTCACATCTCCAGCATCCAGTCCTCCCCATCCACAAACATCAAACAACTGTTCTCCCATATTTTTACAGTGGGTTGATTGTGTTTCACAACTTCTGCGCATGTATCCCTTTGCTTTTGAGTTTTCTTCTGCATTCCTGGTGGATCTATTGGACTGTATGCTTTCCTGTCGCTTTGGAAACTTCTTGTGCAATTGTGAGAAGGAGCGGCAGCAATGTGCTATTTCTGAAGTATGTGGCTGTCTATGGGCATATTTAGCTGATTTACGAGCTTCGGAAGGAAGTTCACATGTGCATTATAACCTTTTCTATGATCCAACGATTCCAACCAAACATGATGGCGCTCTCTTACCTCCTGCAGCAGCTCTAGCTCCAACTCTCTGGCCTCAGTTCCATCTTCGTTGGGCTTGTCCTTCTGAATCTCAAGCGGGCGAACTTGAAGTGAGATGCAGGAAAATGGCTATCAAGTTCTCTGAACTGCAGAAGGAAAAGGAAATAGCCGATAGGAAAGCTCAAGAGATGACAGCTGCCATGGAATCGTTAAAAGCAGAGTTGTATATTGAGAAACAGTTGAGTATTTCAGCTAGGAATGTTGCAAAAAGTGCAAGCAAAGAATGTGAAGCCATAAAGAGAGCAATTCAATCTCTAGGTTGCAAAGTTCAAGTCTCTAGTAATGGTTACTGTACTGTTGACATTGAGGGCGATCTAATGAAATCCAAACAGAGAAGTCATCCTGCTTCAAGGAGAACTTCAGATCGTTCACTGCCTGTTGCTGATGAGAAAGACCTTGCCGTTTCTATCACAGTAACGGCAGATGATGTGCCAAGCAACCCTCTCAGTCACGTATGTGAGGCACTTTGTCCATTGCGCACCCGGGATGGAGGATGCCGATGGCCTGATGCTGGTTGTGCTCATTTGGGCAGCCAATTTATCGGACTAAAGGCTAATTTTGATGCATTTGACCAACTATCCATATATGACGGTTATTTCAAGCCGGAGTGA 2568 44.63 MAAPKPRTSRSKSLRDAPDSEKMDGAYSWDALEWTKIEHVSRSVSRVKLDCLLEAEEVIAEGYGVVLVNTDEAGTLFVTNFRLLFLSEGTMDVIALGTIPLATIEKFNKIVVKMNSVSRQSEKSPARRLLQVIGKDMRIIVFGFRPRTKQRRKVYDGLLSCMKPARIWDLYAFKSGPFKYSNTDPKVRLLNEYFRLLGKSSLWASMSMIEDGSFTLSNELWRITNINSSYALCQSYPFALVVPKHISDEEMLQASTFRARCRLPVVSWCNPGTGAVLARSSQPLVGLMMNMRSNTDEKLVAGLCSHLAGAHGSPRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESLTRLREYLDTHGAKSSDGMSSYLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALEDATVLVHCSDGWDRTTQLVSLASLLLDPYYRTFTGFQALIEKDWLAFGHPFSDRAGMPTVSGSGNLQLARQSSTGSFSSSPMRQPPGSFTSPASSPPHPQTSNNCSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDCMLSCRFGNFLCNCEKERQQCAISEVCGCLWAYLADLRASEGSSHVHYNLFYDPTIPTKHDGALLPPAAALAPTLWPQFHLRWACPSESQAGELEVRCRKMAIKFSELQKEKEIADRKAQEMTAAMESLKAELYIEKQLSISARNVAKSASKECEAIKRAIQSLGCKVQVSSNGYCTVDIEGDLMKSKQRSHPASRRTSDRSLPVADEKDLAVSITVTADDVPSNPLSHVCEALCPLRTRDGGCRWPDAGCAHLGSQFIGLKANFDAFDQLSIYDGYFKPE 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22362386 22375738 + MC04g1442 Mch4g2000 686712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2000 855 SMART gram2001c 43 111 IPR004182 -
Mch4g2000 855 SUPERFAMILY PH domain-like 51 174 - -
Mch4g2000 855 MobiDBLite consensus disorder prediction 505 535 - -
Mch4g2000 855 ProSitePatterns Tyrosine specific protein phosphatases active site. 441 451 IPR016130 GO:0016311(InterPro)
Mch4g2000 855 Pfam Myotubularin-like phosphatase domain 201 593 IPR010569 -
Mch4g2000 855 PANTHER MYOTUBULARIN-RELATED 13 794 IPR030564 GO:0004438(PANTHER)|GO:0106018(PANTHER)
Mch4g2000 855 Gene3D - 63 161 IPR011993 -
Mch4g2000 855 Coils Coil 679 706 - -
Mch4g2000 855 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 214 658 IPR029021 -
Mch4g2000 855 MobiDBLite consensus disorder prediction 1 22 - -
Mch4g2000 855 ProSiteProfiles Myotubularin phosphatase domain. 193 654 IPR010569 -
Mch4g2000 855 CDD PTP-MTM-like 261 553 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2000 K18081 - - csv:101204839 1563.13
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch11g1552 . 86 376 Protein tyrosine phosphatase (PTP) family AT1G71860 66.2 1.7e-111 399.4
Mch1g0184 . 21 920 Protein tyrosine phosphatase (PTP) family AT5G23720 64.5 0.0e+00 1077.4
Mch4g0086 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 1.2e-71 266.2
Mch9g1831 . 96 373 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 5.3e-114 407.5
Mch9g1401 . 20 277 Protein tyrosine phosphatase (PTP) family AT3G10940 66.4 2.7e-102 368.6
Mch8g1510 . 254 702 Protein tyrosine phosphatase (PTP) family AT3G01510 72.2 1.8e-201 698.7
Mch2g0685 . 9 231 Protein tyrosine phosphatase (PTP) family AT2G32960 62.9 9.5e-78 287.0
Mch4g0093 . 10 243 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 9.8e-75 276.9
Mch8g3193 . 17 264 Protein tyrosine phosphatase (PTP) family AT2G35680 55.8 1.2e-80 297.0
Mch8g3193 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 8.2e-47 183.7
Mch2g0685 . 43 230 Protein tyrosine phosphatase (PTP) family AT4G03960 68.6 2.1e-72 268.9
Mch4g0093 . 43 242 Protein tyrosine phosphatase (PTP) family AT4G03960 62.5 4.0e-68 254.6
Mch6g1423 . 5 185 Protein tyrosine phosphatase (PTP) family AT4G03960 53.6 4.3e-54 208.0
Mch6g1423 . 7 216 Protein tyrosine phosphatase (PTP) family AT3G02800 67.0 4.0e-79 291.2
Mch2g0685 . 40 224 Protein tyrosine phosphatase (PTP) family AT3G02800 55.1 2.2e-53 205.7
Mch9g1591 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 66.7 1.8e-63 241.1
Mch8g2431 . 1 398 Protein tyrosine phosphatase (PTP) family AT5G39400 66.7 3.4e-154 541.6
Mch4g0722 . 38 619 Protein tyrosine phosphatase (PTP) family AT3G19420 66.1 6.3e-221 763.8
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G19420 61.8 1.7e-197 686.0
Mch1g1234 . 33 603 Protein tyrosine phosphatase (PTP) family AT3G50110 60.8 1.1e-188 656.8
Mch4g0722 . 48 619 Protein tyrosine phosphatase (PTP) family AT3G50110 58.2 1.5e-180 629.8
Mch6g0629 . 1 1248 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1087.8
Mch6g0258 . 3 314 Protein tyrosine phosphatase (PTP) family AT5G58160 55.1 8.4e-95 345.9
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1183.3
Mch4g2000 . 1 856 Protein tyrosine phosphatase (PTP) family AT5G04540 66.5 0.0e+00 1120.5
Mch10g1638 . 10 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.9 9.2e-112 400.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007488 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 3 1 1 35