Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2000 ATGGCAGCGCCAAAGCCACGCACCAGTCGCTCCAAGTCTCTCAGGGATGCTCCTGATTCGGAGAAGATGGACGGTGCCTATAGCTGGGACGCCCTCGAATGGACCAAGATTGAGCACGTTTCGCGGTCTGTTTCGCGTGTGAAATTGGATTGCTTGCTTGAAGCGGAGGAAGTCATTGCTGAGGGCTATGGTGTTGTTCTTGTGAATACCGATGAGGCGGGTACCTTGTTTGTAACCAATTTTCGTCTTCTATTTCTGAGTGAAGGAACGATGGATGTTATTGCCCTTGGGACTATACCACTGGCCACAATTGAAAAATTCAACAAAATAGTTGTGAAGATGAATTCTGTCTCTCGCCAATCTGAAAAGTCTCCAGCTCGACGACTTCTTCAGGTCATTGGAAAAGACATGAGAATTATTGTCTTTGGTTTTCGTCCAAGAACAAAACAGAGGCGTAAAGTATATGATGGATTATTGAGTTGTATGAAGCCTGCAAGAATATGGGATCTATATGCATTCAAGTCCGGGCCATTCAAGTACAGTAATACAGACCCAAAAGTTCGCTTGCTAAATGAGTATTTTCGACTTCTTGGAAAGAGCTCCCTCTGGGCATCAATGAGTATGATTGAAGATGGATCATTTACATTGTCCAATGAGTTGTGGAGAATAACTAACATCAATTCCAGTTATGCTCTGTGTCAGAGTTATCCATTTGCATTGGTTGTACCAAAGCACATTAGTGATGAAGAAATGTTGCAGGCTTCTACCTTCCGGGCTAGATGCCGTTTGCCTGTTGTTTCGTGGTGCAATCCTGGTACTGGAGCTGTTCTTGCACGTTCATCTCAACCTTTAGTTGGTCTTATGATGAATATGAGAAGTAATACTGATGAAAAGCTTGTTGCTGGACTTTGTTCCCATCTCGCTGGTGCTCATGGGTCACCTCGTAGGAAGCTTTATATAGCTGATGCAAGGCCTAGAAAAAATGCTTTAGCAAACGGAGCTATGGGAGGTGGCTCAGAATCATCATCAAATTATTTCCAATCTGAGATAGTTTTTTTTGGGATTGACAACATTCATGCAATGAGAGAAAGTCTTACGCGGCTCAGAGAGTACTTGGATACCCATGGTGCTAAATCATCCGATGGAATGTCCTCATATTTGAGACATGGTGGATGGACTTGGGGTGGAGGTAATCTTAGTAGCATGTCTGCATCTGTATCAACTCTTGGAGATAGTGGCTGGTTAATCCATGTTCAAAGCGTCTTGGCTGGTTCAGCATGGATTGCTGCACGTGTTGCTTTGGAAGATGCAACGGTTCTGGTTCACTGCAGTGATGGCTGGGACAGAACAACACAACTGGTTTCACTTGCTAGCTTGCTACTTGATCCTTATTATCGGACGTTCACTGGATTTCAGGCACTGATTGAAAAGGATTGGCTGGCATTTGGTCATCCTTTCTCAGATCGAGCTGGCATGCCAACCGTATCGGGAAGTGGTAACTTGCAACTCGCTCGGCAGTCTTCTACTGGAAGTTTTTCATCTTCACCTATGCGTCAGCCACCGGGATCATTCACATCTCCAGCATCCAGTCCTCCCCATCCACAAACATCAAACAACTGTTCTCCCATATTTTTACAGTGGGTTGATTGTGTTTCACAACTTCTGCGCATGTATCCCTTTGCTTTTGAGTTTTCTTCTGCATTCCTGGTGGATCTATTGGACTGTATGCTTTCCTGTCGCTTTGGAAACTTCTTGTGCAATTGTGAGAAGGAGCGGCAGCAATGTGCTATTTCTGAAGTATGTGGCTGTCTATGGGCATATTTAGCTGATTTACGAGCTTCGGAAGGAAGTTCACATGTGCATTATAACCTTTTCTATGATCCAACGATTCCAACCAAACATGATGGCGCTCTCTTACCTCCTGCAGCAGCTCTAGCTCCAACTCTCTGGCCTCAGTTCCATCTTCGTTGGGCTTGTCCTTCTGAATCTCAAGCGGGCGAACTTGAAGTGAGATGCAGGAAAATGGCTATCAAGTTCTCTGAACTGCAGAAGGAAAAGGAAATAGCCGATAGGAAAGCTCAAGAGATGACAGCTGCCATGGAATCGTTAAAAGCAGAGTTGTATATTGAGAAACAGTTGAGTATTTCAGCTAGGAATGTTGCAAAAAGTGCAAGCAAAGAATGTGAAGCCATAAAGAGAGCAATTCAATCTCTAGGTTGCAAAGTTCAAGTCTCTAGTAATGGTTACTGTACTGTTGACATTGAGGGCGATCTAATGAAATCCAAACAGAGAAGTCATCCTGCTTCAAGGAGAACTTCAGATCGTTCACTGCCTGTTGCTGATGAGAAAGACCTTGCCGTTTCTATCACAGTAACGGCAGATGATGTGCCAAGCAACCCTCTCAGTCACGTATGTGAGGCACTTTGTCCATTGCGCACCCGGGATGGAGGATGCCGATGGCCTGATGCTGGTTGTGCTCATTTGGGCAGCCAATTTATCGGACTAAAGGCTAATTTTGATGCATTTGACCAACTATCCATATATGACGGTTATTTCAAGCCGGAGTGA 2568 44.63 MAAPKPRTSRSKSLRDAPDSEKMDGAYSWDALEWTKIEHVSRSVSRVKLDCLLEAEEVIAEGYGVVLVNTDEAGTLFVTNFRLLFLSEGTMDVIALGTIPLATIEKFNKIVVKMNSVSRQSEKSPARRLLQVIGKDMRIIVFGFRPRTKQRRKVYDGLLSCMKPARIWDLYAFKSGPFKYSNTDPKVRLLNEYFRLLGKSSLWASMSMIEDGSFTLSNELWRITNINSSYALCQSYPFALVVPKHISDEEMLQASTFRARCRLPVVSWCNPGTGAVLARSSQPLVGLMMNMRSNTDEKLVAGLCSHLAGAHGSPRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESLTRLREYLDTHGAKSSDGMSSYLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALEDATVLVHCSDGWDRTTQLVSLASLLLDPYYRTFTGFQALIEKDWLAFGHPFSDRAGMPTVSGSGNLQLARQSSTGSFSSSPMRQPPGSFTSPASSPPHPQTSNNCSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDCMLSCRFGNFLCNCEKERQQCAISEVCGCLWAYLADLRASEGSSHVHYNLFYDPTIPTKHDGALLPPAAALAPTLWPQFHLRWACPSESQAGELEVRCRKMAIKFSELQKEKEIADRKAQEMTAAMESLKAELYIEKQLSISARNVAKSASKECEAIKRAIQSLGCKVQVSSNGYCTVDIEGDLMKSKQRSHPASRRTSDRSLPVADEKDLAVSITVTADDVPSNPLSHVCEALCPLRTRDGGCRWPDAGCAHLGSQFIGLKANFDAFDQLSIYDGYFKPE 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22362386 22375738 + MC04g1442 Mch4g2000 686712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2000 855 SMART gram2001c 43 111 IPR004182 -
Mch4g2000 855 SUPERFAMILY PH domain-like 51 174 - -
Mch4g2000 855 MobiDBLite consensus disorder prediction 505 535 - -
Mch4g2000 855 ProSitePatterns Tyrosine specific protein phosphatases active site. 441 451 IPR016130 GO:0016311(InterPro)
Mch4g2000 855 Pfam Myotubularin-like phosphatase domain 201 593 IPR010569 -
Mch4g2000 855 PANTHER MYOTUBULARIN-RELATED 13 794 IPR030564 GO:0004438(PANTHER)|GO:0106018(PANTHER)
Mch4g2000 855 Gene3D - 63 161 IPR011993 -
Mch4g2000 855 Coils Coil 679 706 - -
Mch4g2000 855 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 214 658 IPR029021 -
Mch4g2000 855 MobiDBLite consensus disorder prediction 1 22 - -
Mch4g2000 855 ProSiteProfiles Myotubularin phosphatase domain. 193 654 IPR010569 -
Mch4g2000 855 CDD PTP-MTM-like 261 553 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2000 K18081 - csv:101204839 1563.13