Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2019 ATGAGTGCTACCACTGGCGTTCTCTTCTTCTTCTTCATATGGGTTTTGAGCTCTTCTCTGCCTGCTCCTACCATGGCAACTTTCAGTTTCAATCTCACTGTCCCTCATCTTCTTCCAGATCCTGAAGCTGTTGCTTATGAAGTTCAGAGGACAGTGAACGATTCTTTTTCCAGAAGGCAAATGCTATCCATTCATTCGAAAGGCCAAGCTAATTCATGTCAAACTGGGAACCCAATCGACGATTGCTGGCACTGCGACTCGAACTGGCAAGCCAATCGCCAACGGCTCGCCGATTGCGGCATTGGATTTGGGCGAGACGCCATGGGAGGCAAAGGAGGTCAGATCTACATAGTGACAGATTCCTCCGATTCCGACCCCGTAAACCCTCGCCCGGGGACTCTCCGCTACGCCGTAATTCAAGATGAACCTCTCTGGATAGTCTTCTCCGCCGATATGACCATTAAGCTCAAATATGAACTCATGATGAACAGTTACAAAACCCTAGACGGGCGCGGCGCCAATGTTCACATCACCGGCGGCGGCTGCATCACGCTCCAGTACATCTCGAATGTAATCATCCACAACATCAATATCCACCACTGTATCCCTACCGGCCACACCAACATCCGCGCGACCCCTACGCACGTCGGATACCGAGGAAAATCGGACGGCGACGGGATCTCCATCTTCAGCTCGCGCAACATCTGGATCGACCACTGCTCCCTCTCGTACTGTACCGACGGCCTGATCGACGCGATTATGGGATCGACCGGAATCACGATCTCGAACAATTACTTCTCGCACCACGACGAGGTGATGCTGCTAGGGCACGACGACGGCTATTCGCCGGACTCGGCGATGCAGGTGACGATTGCGTTCAATTTGTTCGGGGAGAAGCTTGTGCAGCGGATGCCGCGGTGCCGGCGGGGATACATTCACGTCGTGAACAACAATTTCAGATCGTGGGAGATGTACGCCATCGGCGGCAGCGGTGGTCCGACGATCAATAGCCAGGGGAATCGGTACATTGCTCCGGGAGATCCTAATGCGAAAGAGGTGACGAAGCGCGTGGACACAAGTGCGGGGGATTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACGTAATGGTAAATGGAGCATTTTTTGTGCCTTCAGGGGACGGACTGAGCAATATGTACGTAAAAGCGACGAGCGTGGCGCCCAAATCCGCCGCCCTCGTCGACCAGCTCACTCTCAATGCCGGCGTCTTCGGCGGCCCCAGGGAGAGTGGACAGAGCAGTTCATATCCCGGAGACGAAAGCTCCTCCAGTTCGAGGGCGAGTGGCAGCGATGGCGGTGGGGACTACTTCGGGATGATATTTGGCGGGGGCAACGTGAACAGTGCTCCATCGCCACCATCTCTTTCAGTTCACATCATGGTTCTAATTCTGGTTACTATTTTGGCTCTGTATACTAACTCCAACTATGATGCTTTATTATCATTCACAACATTGTTATTGTAG 1503 53.49 MSATTGVLFFFFIWVLSSSLPAPTMATFSFNLTVPHLLPDPEAVAYEVQRTVNDSFSRRQMLSIHSKGQANSCQTGNPIDDCWHCDSNWQANRQRLADCGIGFGRDAMGGKGGQIYIVTDSSDSDPVNPRPGTLRYAVIQDEPLWIVFSADMTIKLKYELMMNSYKTLDGRGANVHITGGGCITLQYISNVIIHNINIHHCIPTGHTNIRATPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGYSPDSAMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNNFRSWEMYAIGGSGGPTINSQGNRYIAPGDPNAKEVTKRVDTSAGDWSEWNWRTEGDVMVNGAFFVPSGDGLSNMYVKATSVAPKSAALVDQLTLNAGVFGGPRESGQSSSYPGDESSSSSRASGSDGGGDYFGMIFGGGNVNSAPSPPSLSVHIMVLILVTILALYTNSNYDALLSFTTLLL 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22498721 22503804 + MC04g1460 Mch4g2019 686731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2019 500 MobiDBLite consensus disorder prediction 417 443 - -
Mch4g2019 500 MobiDBLite consensus disorder prediction 420 443 - -
Mch4g2019 500 PRINTS Pollen allergen Amb family signature 223 244 IPR018082 -
Mch4g2019 500 PRINTS Pollen allergen Amb family signature 99 116 IPR018082 -
Mch4g2019 500 PRINTS Pollen allergen Amb family signature 159 175 IPR018082 -
Mch4g2019 500 PRINTS Pollen allergen Amb family signature 367 391 IPR018082 -
Mch4g2019 500 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Mch4g2019 500 PRINTS Pollen allergen Amb family signature 396 419 IPR018082 -
Mch4g2019 500 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Mch4g2019 500 PRINTS Pollen allergen Amb family signature 123 148 IPR018082 -
Mch4g2019 500 Gene3D - 76 418 IPR012334 -
Mch4g2019 500 SMART amb_all 151 348 IPR002022 -
Mch4g2019 500 PANTHER PECTATE LYASE 18-RELATED 27 417 IPR045032 GO:0030570(InterPro)
Mch4g2019 500 Pfam Pectate lyase 159 328 IPR002022 -
Mch4g2019 500 FunFam Pectate lyase 76 418 - -
Mch4g2019 500 SUPERFAMILY Pectin lyase-like 77 416 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0756 Mch-Chr1:11352601 Mch4g2019 Mch-Chr4:22498721 2.44E-46 dispersed
Mch4g2019 Mch-Chr4:22498721 Mch6g2290 Mch-Chr6:24906742 7.52E-180 dispersed
Mch1g0854 Mch-Chr1:11940801 Mch4g2019 Mch-Chr4:22498721 4.76E-217 wgd
Mch4g2019 Mch-Chr4:22498721 Mch9g1816 Mch-Chr9:19952755 3.65E-243 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2019 K01728 - csv:101207535 852.818