Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2047 ATGGAATCCCACCGTGATAAAAACGGCACCGTTGGACGCGTGGATCACTCTTTATCTGTGTGCGGCGGTGTGGCGTCGTACTGGGGCGCCGCGGCGGAGGGCCTCATGGGGAGCCATTTTGACGAGGTCAAACGCATGGTCGCAGAGTTTCGTCGGCCTTTGGTTCGGCTTGGCGGTGAGACCCTCACGATTGCACAAGGTAACGAGATATTGATTGTACGATTTTTAAACGCTGGAATTTTTGGGAATGATCCAAATTCTCTCAACACATTGCCACAGTCAGCAACACGAGCCGCTATGCTTGTGAGAATCAACACTCTTTTGCAAGGCTATTCGAGGATTAGGTTTGAAATTTTAGAAGCCATAACCAGATTGCTCAACCATTACATAACCCCATGTCTTCCTCTTAGAGGCACAATTACTGCTTCTGGTGACCTCGTCCCTCTCTCTTACATTGTTGCACTTTTGATTGCCGAAAAGAAGGTCTTGCTCTTGTTAATGGCACAGCGGTTGGCTCTGGCTTGGCCTCCATAG 534 49.44 MESHRDKNGTVGRVDHSLSVCGGVASYWGAAAEGLMGSHFDEVKRMVAEFRRPLVRLGGETLTIAQGNEILIVRFLNAGIFGNDPNSLNTLPQSATRAAMLVRINTLLQGYSRIRFEILEAITRLLNHYITPCLPLRGTITASGDLVPLSYIVALLIAEKKVLLLLMAQRLALAWPP 177
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 22712733 22716296 - MC04g_new0562 Mch4g2047 686759
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2047 177 PANTHER HISTIDINE AMMONIA-LYASE 25 69 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Mch4g2047 177 Gene3D - 71 172 IPR024083 -
Mch4g2047 177 SUPERFAMILY L-aspartase-like 27 164 IPR008948 GO:0003824(InterPro)
Mch4g2047 177 Pfam Aromatic amino acid lyase 72 163 IPR001106 -
Mch4g2047 177 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 138 154 IPR022313 GO:0016841(InterPro)
Mch4g2047 177 Gene3D - 22 70 IPR024083 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2047 Mch-Chr4:22712733 Mch6g0950 Mch-Chr6:6730339 2.88E-25 dispersed
Mch1g0817 Mch-Chr1:11724681 Mch4g2047 Mch-Chr4:22712733 1.37E-50 wgd
Mch4g2047 Mch-Chr4:22712733 Mch9g1792 Mch-Chr9:19796163 3.76E-50 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2047 K10775 - gmx:100801470 160.229