Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2052 ATGAATAGAGGATTGGATTCGGTGATAGAATCAATGAGGAACCCTGAGAAGTGCTTAGATTCTCAGCTATGGCATGCCTGTGCTGGTGGGATGGTTCAATTGCCATCCATTAACTCAAAGGTAGTCTACTTCCCCCAGGGTCATGCCGAGCACGCCCAGGGGAATGTTGATTTTGGGAATTCTAGAATTCCTTCGATCATTCTTTGCAGAGTATCTGGCATAAGACATATGGCAGATCCCGAAACAGATGAGGTTTTTGCTAAGATAAGGTTGATTCCAGTGAGGAAAGACGAATTCGATGTGGAAGATAATGATGAACTTCTGGGGCACCGTGAGATTAGGAGCCAGGAGAAACCTGCCTCCTTTGCCAAGACACTGACACAATCTGATGCAAACAACGGCGGGGGATTCTCTGTGCCTCGCTATTGTGCCGAGACCATCTTTCCTCCTTTGGATTACTCGGCAGAGCCTCCTGTTCAGACCATTCTTGCCAAGGATGTTCATGGTGAGATTTGGAAGTTTAGGCATATATACAGGGGGACTCCACGGCGCCATCTTTTGACGACGGGGTGGAGTAACTTTGTGAATCAGAAGAAACTTGTTGCTGGTGACTCAATCGTTTTCCTGAGGGCTGAAACTGGTGATCTCTGTGTCGGAGTAAGGCGAGCCAAGAAGGGAATTGGTTGTGGAATCGATTACTCACCTGGGTGGAACCCAACAAATTCTGGCTCTCCACTTGTTGGGTATTCTGATTTTATGAGGGAGAATGAAGGTAGACTGGTAAGAAGAAATCCGAATGGGAACCTGAGCGGAAGAGTGAAAGTCGAATCTGTCATCCAAGCTGCAATGCTTGCTGCCAGCACAAAGCCGTTTGAGGTTGTGTACTACCCATGTGCTGGTACTCCAGAGTTTGTTGTTAAAGCCTCTACTGTGAAATCTGCTTTGGATCATCACTGGGGCTCTGGTATGAGATTCAAGATGCCTTTCGAAACCGAAGATTCATCTCGGATAAGCTGGTTTATGGGAACTATATCTTATGTCCAGGTAGCTGATCCTATTCGGTGGCCTAATTCTCCATGGCGATCTCTGCAGGTGACATGGGACGAGCCAGATTTACTGCAAAATGTGAAGAGTGTTAACCCGTGGTCGGTTGAAGTGGTAGTAAATATGCCAGCTATCCATGTCTCCCCCTTCTCGCCACCAAGAAAGAAGCCGCGTTTTCCGCTTCCAGCAGACACTGCCGTATTTGGTCACCTTCCAATGCCATCATTTTCGACCAATTTCTTTGAATCAACCAACCCATTACTAGGTATTACCAATAACAATATTCCTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGACTCTCTTCATCCAACCTCCAAATCAGCAGACCGCAGTCGGGACAGTTTCCCATTGGTTTTAAGCACCTTGATGGTGCCACTCCTCTTCCTGGAATCCATGGCGAAGATATCTTTGGAGGCACGAAAAACCCCGATAACCTTTCTCACTGGCTAACAATGGGAAACCACATTCAAAGCCCAAAAGAGATCAAAGAAACAAAACCAGCTCACATCTTATTGTTTGGCCAACTCATTCTGCCTGATCAACAGATTTCTAAGAGCTGCTCTGGAGATACGACGAATGCATCAGATGCCAATCTAGAGAAAGCATCAAACCTTTCTGACGGTTCAGGTTCATCATCACAACAGAATGGTTCGCTGGAGAATTCGTCAGATGGAGGATCTACCTCGTACAACGGTCAGGAAAAAACTGGTCTTGGCTTGGACACTGGTCATTGCAAGGTTTTTATGGAGTTGGAGAACGTCGGTCGTACTCTCGACCTATCGGTCCTCGGATCGTACGAAGAATTGTATAGAAAGCTGGCCAATATGTTTGGTGTAGGAAGCTCAGAGATGCTGAGTTCTGTTCTTTATCAGGATGCACTTGGTGCGACAAGGCATGCTGGAGATGAGCCTTTCAGCGAGTTTCTGAAGACGGCAAGAAGGCTAACCGTACACGCAGATTCTCGAAGTAGCGACGACATCAGAATGTAG 2061 46.87 MNRGLDSVIESMRNPEKCLDSQLWHACAGGMVQLPSINSKVVYFPQGHAEHAQGNVDFGNSRIPSIILCRVSGIRHMADPETDEVFAKIRLIPVRKDEFDVEDNDELLGHREIRSQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPPLDYSAEPPVQTILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAETGDLCVGVRRAKKGIGCGIDYSPGWNPTNSGSPLVGYSDFMRENEGRLVRRNPNGNLSGRVKVESVIQAAMLAASTKPFEVVYYPCAGTPEFVVKASTVKSALDHHWGSGMRFKMPFETEDSSRISWFMGTISYVQVADPIRWPNSPWRSLQVTWDEPDLLQNVKSVNPWSVEVVVNMPAIHVSPFSPPRKKPRFPLPADTAVFGHLPMPSFSTNFFESTNPLLGITNNNIPAGIQGARHTQFGLSSSNLQISRPQSGQFPIGFKHLDGATPLPGIHGEDIFGGTKNPDNLSHWLTMGNHIQSPKEIKETKPAHILLFGQLILPDQQISKSCSGDTTNASDANLEKASNLSDGSGSSSQQNGSLENSSDGGSTSYNGQEKTGLGLDTGHCKVFMELENVGRTLDLSVLGSYEELYRKLANMFGVGSSEMLSSVLYQDALGATRHAGDEPFSEFLKTARRLTVHADSRSSDDIRM 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22773171 22777129 + MC04g1490 Mch4g2052 686764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2052 686 CDD B3_DNA 121 222 IPR003340 GO:0003677(InterPro)
Mch4g2052 686 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 677 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch4g2052 686 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677(InterPro)
Mch4g2052 686 Pfam Auxin response factor 281 364 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch4g2052 686 Gene3D - 120 224 IPR015300 -
Mch4g2052 686 SUPERFAMILY DNA-binding pseudobarrel domain 107 223 IPR015300 -
Mch4g2052 686 Gene3D - 320 391 - -
Mch4g2052 686 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677(InterPro)
Mch4g2052 686 FunFam Auxin response factor 120 224 - -
Mch4g2052 686 SMART B3_2 122 224 IPR003340 GO:0003677(InterPro)
Mch4g2052 686 ProSiteProfiles PB1 domain profile. 599 677 IPR053793 -
Mch4g2052 686 Gene3D - 598 682 - -
Mch4g2052 686 FunFam Auxin response factor 319 392 - -
Mch4g2052 686 MobiDBLite consensus disorder prediction 558 592 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0348 Mch-Chr2:2596558 Mch4g2052 Mch-Chr4:22773171 1.27E-269 dispersed
Mch4g2052 Mch-Chr4:22773171 Mch8g0190 Mch-Chr8:1253533 7.98E-110 dispersed
Mch6g2382 Mch-Chr6:25689779 Mch4g2052 Mch-Chr4:22773171 5.01E-11 transposed
Mch1g0809 Mch-Chr1:11657507 Mch4g2052 Mch-Chr4:22773171 7.49E-277 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43250 PF02362 B3 4.70E-21 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2052 K14486 - csv:101204568 1103.97