Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch4g2057 | ATGGCCAAAAATGCGGCGGAGCGTGGGTCGTTCTCGGGCAAGGACTATCACGATCCGCCTCCGGCGCCGCTGATCGACGCCGTGGAGATCACGAAGTGGTCGTTCTACAGAGCTCTGATTGCGGAGTTCATAGCCACAATGCTGTTCCTCTACATCACCGTGTTGACTGTAATCGGCTACAAATCGCAGACCGATCATACCGCAAACAAGAATGTGGATCCATGTGGTGGAGTGGGGATTCTCGGCATTGCTTGGGCTTTCGGAGGAATGATCTTCGTTCTCGTTTACTGCACTGCTGGGATTTCAGGGGGTCACATAAACCCAGCAGTGACATTTGGACTGCTGTTGGCCCGTAAGGTGTCACTGGTGCGGGCCGTTATGTACATGGTGGCCCAATGCTTAGGGGCCATTAGCGGAGTTGGGCTCGTCAAGGCCTTCCAGAAGGCCCACTTCCAGAAGTACGGCGGCGGGGCCAATGGGCTCGCCGACGGCTACACCACCGGCGTCGGATTGGCGGCGGAGATCGTGGGTACATTCGTGTTGGTGTACACCGTGTTCTCTGCCACCGATCCCAAAAGAAACGCCAGAGATTCCCATGTTCCGGTTTTGGCTCCACTTCCAATTGGGTTTGCAGTGTTGATGGTTCATTTGGCCACCATTCCAATCACTGGCACTGGCATCAACCCAGCAAGAAGCTTGGGATCTGCTGTTATTCTCAATGACCAAAAGACTTGGAATGACCATTGGATATTTTGGGTTGGACCCTTCATAGGGGCAGCCATTGCAGCTTTCTACCACCAATTCATCTTGAGGGCAGGAGCTGTAAAAGCCCTTGGCTCATTCAGAAGCAACCCCCATGTTTAA | 864 | 53.7 | MAKNAAERGSFSGKDYHDPPPAPLIDAVEITKWSFYRALIAEFIATMLFLYITVLTVIGYKSQTDHTANKNVDPCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKAHFQKYGGGANGLADGYTTGVGLAAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVLMVHLATIPITGTGINPARSLGSAVILNDQKTWNDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPHV | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 22803334 | 22807233 | + | MC04g_new0563 | Mch4g2057 | 686769 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch4g2057 | 287 | SUPERFAMILY | Aquaporin-like | 29 | 271 | IPR023271 | - | |
Mch4g2057 | 287 | ProSitePatterns | MIP family signature. | 105 | 113 | IPR022357 | - | |
Mch4g2057 | 287 | Gene3D | Glycerol uptake facilitator protein. | 22 | 287 | IPR023271 | - | |
Mch4g2057 | 287 | PRINTS | Major intrinsic protein family signature | 87 | 111 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch4g2057 | 287 | PRINTS | Major intrinsic protein family signature | 124 | 143 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch4g2057 | 287 | PRINTS | Major intrinsic protein family signature | 173 | 191 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch4g2057 | 287 | PRINTS | Major intrinsic protein family signature | 249 | 269 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch4g2057 | 287 | PRINTS | Major intrinsic protein family signature | 37 | 56 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch4g2057 | 287 | PRINTS | Major intrinsic protein family signature | 209 | 231 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch4g2057 | 287 | FunFam | Probable aquaporin PIP1-2 | 22 | 285 | - | - | |
Mch4g2057 | 287 | NCBIfam | MIP family channel protein | 41 | 266 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch4g2057 | 287 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 8 | 283 | IPR034294 | GO:0005886(PANTHER)|GO:0015250(PANTHER) | |
Mch4g2057 | 287 | Pfam | Major intrinsic protein | 29 | 266 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch4g2057 | 287 | CDD | MIP | 37 | 269 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0356 | Mch-Chr2:2667614 | Mch4g2057 | Mch-Chr4:22803334 | 2.78E-163 | dispersed | |
Mch4g0481 | Mch-Chr4:3094758 | Mch4g2057 | Mch-Chr4:22803334 | 3.35E-153 | dispersed | |
Mch4g2057 | Mch-Chr4:22803334 | Mch9g1489 | Mch-Chr9:17287242 | 2.34E-135 | dispersed | |
Mch1g0798 | Mch-Chr1:11604393 | Mch4g2057 | Mch-Chr4:22803334 | 3.45E-144 | wgd | |
Mch4g2057 | Mch-Chr4:22803334 | Mch5g1752 | Mch-Chr5:18123479 | 8.95E-149 | wgd | |
Mch4g2057 | Mch-Chr4:22803334 | Mch9g1784 | Mch-Chr9:19720111 | 1.69E-178 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch4g2057 | K09872 | - | gmx:100815583 | 509.22 |