Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2057 ATGGCCAAAAATGCGGCGGAGCGTGGGTCGTTCTCGGGCAAGGACTATCACGATCCGCCTCCGGCGCCGCTGATCGACGCCGTGGAGATCACGAAGTGGTCGTTCTACAGAGCTCTGATTGCGGAGTTCATAGCCACAATGCTGTTCCTCTACATCACCGTGTTGACTGTAATCGGCTACAAATCGCAGACCGATCATACCGCAAACAAGAATGTGGATCCATGTGGTGGAGTGGGGATTCTCGGCATTGCTTGGGCTTTCGGAGGAATGATCTTCGTTCTCGTTTACTGCACTGCTGGGATTTCAGGGGGTCACATAAACCCAGCAGTGACATTTGGACTGCTGTTGGCCCGTAAGGTGTCACTGGTGCGGGCCGTTATGTACATGGTGGCCCAATGCTTAGGGGCCATTAGCGGAGTTGGGCTCGTCAAGGCCTTCCAGAAGGCCCACTTCCAGAAGTACGGCGGCGGGGCCAATGGGCTCGCCGACGGCTACACCACCGGCGTCGGATTGGCGGCGGAGATCGTGGGTACATTCGTGTTGGTGTACACCGTGTTCTCTGCCACCGATCCCAAAAGAAACGCCAGAGATTCCCATGTTCCGGTTTTGGCTCCACTTCCAATTGGGTTTGCAGTGTTGATGGTTCATTTGGCCACCATTCCAATCACTGGCACTGGCATCAACCCAGCAAGAAGCTTGGGATCTGCTGTTATTCTCAATGACCAAAAGACTTGGAATGACCATTGGATATTTTGGGTTGGACCCTTCATAGGGGCAGCCATTGCAGCTTTCTACCACCAATTCATCTTGAGGGCAGGAGCTGTAAAAGCCCTTGGCTCATTCAGAAGCAACCCCCATGTTTAA 864 53.7 MAKNAAERGSFSGKDYHDPPPAPLIDAVEITKWSFYRALIAEFIATMLFLYITVLTVIGYKSQTDHTANKNVDPCGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKAHFQKYGGGANGLADGYTTGVGLAAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVLMVHLATIPITGTGINPARSLGSAVILNDQKTWNDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPHV 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22803334 22807233 + MC04g_new0563 Mch4g2057 686769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2057 287 SUPERFAMILY Aquaporin-like 29 271 IPR023271 -
Mch4g2057 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Mch4g2057 287 Gene3D Glycerol uptake facilitator protein. 22 287 IPR023271 -
Mch4g2057 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g2057 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g2057 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g2057 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g2057 287 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g2057 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g2057 287 FunFam Probable aquaporin PIP1-2 22 285 - -
Mch4g2057 287 NCBIfam MIP family channel protein 41 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g2057 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 283 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Mch4g2057 287 Pfam Major intrinsic protein 29 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g2057 287 CDD MIP 37 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0356 Mch-Chr2:2667614 Mch4g2057 Mch-Chr4:22803334 2.78E-163 dispersed
Mch4g0481 Mch-Chr4:3094758 Mch4g2057 Mch-Chr4:22803334 3.35E-153 dispersed
Mch4g2057 Mch-Chr4:22803334 Mch9g1489 Mch-Chr9:17287242 2.34E-135 dispersed
Mch1g0798 Mch-Chr1:11604393 Mch4g2057 Mch-Chr4:22803334 3.45E-144 wgd
Mch4g2057 Mch-Chr4:22803334 Mch5g1752 Mch-Chr5:18123479 8.95E-149 wgd
Mch4g2057 Mch-Chr4:22803334 Mch9g1784 Mch-Chr9:19720111 1.69E-178 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2057 K09872 - gmx:100815583 509.22