Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2077 ATGGGGAAGAGGGGTGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCTGAATCTAAGGAAAAGAAAGATCAGAAATCCAACAAAACAAAGAAAAGATGGTTCGGAAAGCCAAAGAAATTGGAGATAGTGGCATCTGCGGAGCCAGCTCCACTGGATGTGTCTGTTCTACCTATTGAAGAGGTGAAACTAACAGAAGCAGAGAATGAACAGAGCAAGCATGCTTACTCTGTCGCTATTGCCACTGCCGTTGCTGCTGAGGCTGCTGTCGCAGCAGCTCAGGCTGCAGCCGAGGTTGTTCGGCTCACCACCATCCCTCGTTACTCCGGAAAATCAAAGGAGGAAATTGCAGCCATCAAGATCCAGACTGCATTCCGTGGCTATATGGCAAGGAGGGCCCTGAGGGCATTAAGAGGGTTGGTGAGGCTGAAGTCATTAATTCAAGGCCAATCTGTTAAAAGACAAGCAACTACCACATTAAGATGCATGCAGACTCTAGCTCGTGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAAGAGAACCAGGCTCTTCAGAGGCAGCTCCAACACAAACATGAAAGAGAGCTTGAGAGATTAACTGCTTCTGCAAACAATGAATGGGATGATAGTACCAAATCAAAGGAGCAAGTTGAAGCCAGATTAGTGAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCGTTGGCGTATGCTTACACTCATCAGAATTCATGGAAGAATTCTTCGAAGTCTGCAAACCCTACGTTCATGGACCCGAACAATCCCCACTGGGGCTGGAGTTGGTTGGAGCGATGGATGGCCGCTCGTCCATGGGAGGCCAGAAGCACCGTCGATTACCACGATCGTGCCTCCGTCAAGAGCGCGATCAGCCATGCAACCTCAATAGGAGACATCGCTAAAGCTTACGCCCGTCGCGATCTCAACCTCGACATCAAGCCTTTTCCGAGGACGCCTACGAGCCAGAAAACCAGCCGACCGCCGAGTCGCCAATCGCCGGCGACTCCAAGGAAGGCGCAATCGTCGCTATCTGCAGGGAGGAAACTGAAGCCGGCGAGTCCGAGAGGAATCGGCTGGGGCGGAGACGAAGACTCCAGAAGCGGATTGAGTGTCAAATCGGAGCGTTACCGGCGACACAGCATCGCGGGATCATCGGCGAGGGACGACGAAAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCATCGACAGAAGCAGCTAGGGCCAGGTCCCGGTTGTCGAGTCCGATGGGAACGGAGAAGACAGCGGTGACGCCGGAGAAGGGATCGGCGGGTGGAGCAAAGAAGCGACTCTCCTACCCGGCCTCACCGGCGACGGCGACGGCGCGGAGGCACTCCGGTCCGCCGAAAATAGACGCTAGCCCGATTAAGAAAGTTGAAGGGAAAGATTATACCGGAGAGAGCAGATAG 1461 52.98 MGKRGGWFSAVKKAFAPESKEKKDQKSNKTKKRWFGKPKKLEIVASAEPAPLDVSVLPIEEVKLTEAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQHKHERELERLTASANNEWDDSTKSKEQVEARLVNRQEAATRRERALAYAYTHQNSWKNSSKSANPTFMDPNNPHWGWSWLERWMAARPWEARSTVDYHDRASVKSAISHATSIGDIAKAYARRDLNLDIKPFPRTPTSQKTSRPPSRQSPATPRKAQSSLSAGRKLKPASPRGIGWGGDEDSRSGLSVKSERYRRHSIAGSSARDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAVTPEKGSAGGAKKRLSYPASPATATARRHSGPPKIDASPIKKVEGKDYTGESR 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 22941834 22947524 + MC04g1514 Mch4g2077 686789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2077 486 MobiDBLite consensus disorder prediction 472 486 - -
Mch4g2077 486 MobiDBLite consensus disorder prediction 324 351 - -
Mch4g2077 486 PANTHER IQ-DOMAIN 5-RELATED 6 438 - -
Mch4g2077 486 MobiDBLite consensus disorder prediction 395 411 - -
Mch4g2077 486 Coils Coil 177 197 - -
Mch4g2077 486 MobiDBLite consensus disorder prediction 376 394 - -
Mch4g2077 486 SMART iq_5 113 135 IPR000048 GO:0005515(InterPro)
Mch4g2077 486 MobiDBLite consensus disorder prediction 1 32 - -
Mch4g2077 486 ProSiteProfiles IQ motif profile. 114 142 - -
Mch4g2077 486 Gene3D iswi atpase 111 149 - -
Mch4g2077 486 MobiDBLite consensus disorder prediction 319 486 - -
Mch4g2077 486 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2077 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0056 Mch-Chr10:297943 Mch4g2077 Mch-Chr4:22941834 3.19E-24 dispersed
Mch11g0421 Mch-Chr11:2644375 Mch4g2077 Mch-Chr4:22941834 1.68E-30 dispersed
Mch3g1526 Mch-Chr3:17362685 Mch4g2077 Mch-Chr4:22941834 1.81E-10 dispersed
Mch4g2077 Mch-Chr4:22941834 Mch6g1311 Mch-Chr6:10866131 6.13E-34 dispersed
Mch10g1067 Mch-Chr10:7794760 Mch4g2077 Mch-Chr4:22941834 9.26E-31 transposed
Mch4g0291 Mch-Chr4:1872019 Mch4g2077 Mch-Chr4:22941834 4.73E-16 transposed
Mch4g1577 Mch-Chr4:19064676 Mch4g2077 Mch-Chr4:22941834 2.60E-30 transposed
Mch5g0018 Mch-Chr5:147548 Mch4g2077 Mch-Chr4:22941834 1.17E-38 transposed
Mch7g0083 Mch-Chr7:896691 Mch4g2077 Mch-Chr4:22941834 6.42E-31 transposed
Mch1g0786 Mch-Chr1:11528501 Mch4g2077 Mch-Chr4:22941834 1.97E-123 wgd
Mch4g2077 Mch-Chr4:22941834 Mch5g1773 Mch-Chr5:18235496 2.79E-83 wgd
Mch4g2077 Mch-Chr4:22941834 Mch9g1765 Mch-Chr9:19578536 3.73E-109 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1765 . 111 276 IQD Protein Family AT3G09710 54.1 6.8e-42 168.7
Mch4g2077 . 1 475 IQD Protein Family AT3G52290 54.6 4.4e-104 375.2
Mch6g1311 . 3 411 IQD Protein Family AT3G22190 56.9 8.2e-95 344.4
Mch11g0421 . 72 508 IQD Protein Family AT2G26180 59.5 3.7e-116 415.2
Mch10g1067 . 40 215 IQD Protein Family AT2G33990 55.3 7.2e-49 191.0
Mch10g1067 . 17 216 IQD Protein Family AT3G15050 56.2 1.2e-56 216.9
Mch4g1577 . 128 475 IQD Protein Family AT5G13460 50.7 5.4e-73 271.9
Mch7g0083 . 106 486 IQD Protein Family AT2G43680 53.4 1.2e-87 321.2
Mch5g0018 . 1 508 IQD Protein Family AT4G00820 55.1 2.0e-122 436.4
Mch5g0018 . 1 508 IQD Protein Family AT1G01110 53.4 1.4e-120 430.3
Mch9g0298 . 1 397 IQD Protein Family AT3G16490 52.8 3.3e-74 275.8
Mch6g0862 . 1 394 IQD Protein Family AT3G16490 51.2 7.1e-69 258.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40