Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g2077 | ATGGGGAAGAGGGGTGGCTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCTGAATCTAAGGAAAAGAAAGATCAGAAATCCAACAAAACAAAGAAAAGATGGTTCGGAAAGCCAAAGAAATTGGAGATAGTGGCATCTGCGGAGCCAGCTCCACTGGATGTGTCTGTTCTACCTATTGAAGAGGTGAAACTAACAGAAGCAGAGAATGAACAGAGCAAGCATGCTTACTCTGTCGCTATTGCCACTGCCGTTGCTGCTGAGGCTGCTGTCGCAGCAGCTCAGGCTGCAGCCGAGGTTGTTCGGCTCACCACCATCCCTCGTTACTCCGGAAAATCAAAGGAGGAAATTGCAGCCATCAAGATCCAGACTGCATTCCGTGGCTATATGGCAAGGAGGGCCCTGAGGGCATTAAGAGGGTTGGTGAGGCTGAAGTCATTAATTCAAGGCCAATCTGTTAAAAGACAAGCAACTACCACATTAAGATGCATGCAGACTCTAGCTCGTGTGCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAAGAGAACCAGGCTCTTCAGAGGCAGCTCCAACACAAACATGAAAGAGAGCTTGAGAGATTAACTGCTTCTGCAAACAATGAATGGGATGATAGTACCAAATCAAAGGAGCAAGTTGAAGCCAGATTAGTGAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCGTTGGCGTATGCTTACACTCATCAGAATTCATGGAAGAATTCTTCGAAGTCTGCAAACCCTACGTTCATGGACCCGAACAATCCCCACTGGGGCTGGAGTTGGTTGGAGCGATGGATGGCCGCTCGTCCATGGGAGGCCAGAAGCACCGTCGATTACCACGATCGTGCCTCCGTCAAGAGCGCGATCAGCCATGCAACCTCAATAGGAGACATCGCTAAAGCTTACGCCCGTCGCGATCTCAACCTCGACATCAAGCCTTTTCCGAGGACGCCTACGAGCCAGAAAACCAGCCGACCGCCGAGTCGCCAATCGCCGGCGACTCCAAGGAAGGCGCAATCGTCGCTATCTGCAGGGAGGAAACTGAAGCCGGCGAGTCCGAGAGGAATCGGCTGGGGCGGAGACGAAGACTCCAGAAGCGGATTGAGTGTCAAATCGGAGCGTTACCGGCGACACAGCATCGCGGGATCATCGGCGAGGGACGACGAAAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCATCGACAGAAGCAGCTAGGGCCAGGTCCCGGTTGTCGAGTCCGATGGGAACGGAGAAGACAGCGGTGACGCCGGAGAAGGGATCGGCGGGTGGAGCAAAGAAGCGACTCTCCTACCCGGCCTCACCGGCGACGGCGACGGCGCGGAGGCACTCCGGTCCGCCGAAAATAGACGCTAGCCCGATTAAGAAAGTTGAAGGGAAAGATTATACCGGAGAGAGCAGATAG | 1461 | 52.98 | MGKRGGWFSAVKKAFAPESKEKKDQKSNKTKKRWFGKPKKLEIVASAEPAPLDVSVLPIEEVKLTEAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYMARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQHKHERELERLTASANNEWDDSTKSKEQVEARLVNRQEAATRRERALAYAYTHQNSWKNSSKSANPTFMDPNNPHWGWSWLERWMAARPWEARSTVDYHDRASVKSAISHATSIGDIAKAYARRDLNLDIKPFPRTPTSQKTSRPPSRQSPATPRKAQSSLSAGRKLKPASPRGIGWGGDEDSRSGLSVKSERYRRHSIAGSSARDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAVTPEKGSAGGAKKRLSYPASPATATARRHSGPPKIDASPIKKVEGKDYTGESR | 486 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 22941834 | 22947524 | + | MC04g1514 | Mch4g2077 | 686789 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g2077 | 486 | MobiDBLite | consensus disorder prediction | 472 | 486 | - | - | |
| Mch4g2077 | 486 | MobiDBLite | consensus disorder prediction | 324 | 351 | - | - | |
| Mch4g2077 | 486 | PANTHER | IQ-DOMAIN 5-RELATED | 6 | 438 | - | - | |
| Mch4g2077 | 486 | MobiDBLite | consensus disorder prediction | 395 | 411 | - | - | |
| Mch4g2077 | 486 | Coils | Coil | 177 | 197 | - | - | |
| Mch4g2077 | 486 | MobiDBLite | consensus disorder prediction | 376 | 394 | - | - | |
| Mch4g2077 | 486 | SMART | iq_5 | 113 | 135 | IPR000048 | GO:0005515(InterPro) | |
| Mch4g2077 | 486 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Mch4g2077 | 486 | ProSiteProfiles | IQ motif profile. | 114 | 142 | - | - | |
| Mch4g2077 | 486 | Gene3D | iswi atpase | 111 | 149 | - | - | |
| Mch4g2077 | 486 | MobiDBLite | consensus disorder prediction | 319 | 486 | - | - | |
| Mch4g2077 | 486 | Pfam | IQ calmodulin-binding motif | 117 | 135 | IPR000048 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch10g0056 | Mch-Chr10:297943 | Mch4g2077 | Mch-Chr4:22941834 | 3.19E-24 | dispersed | |
| Mch11g0421 | Mch-Chr11:2644375 | Mch4g2077 | Mch-Chr4:22941834 | 1.68E-30 | dispersed | |
| Mch3g1526 | Mch-Chr3:17362685 | Mch4g2077 | Mch-Chr4:22941834 | 1.81E-10 | dispersed | |
| Mch4g2077 | Mch-Chr4:22941834 | Mch6g1311 | Mch-Chr6:10866131 | 6.13E-34 | dispersed | |
| Mch10g1067 | Mch-Chr10:7794760 | Mch4g2077 | Mch-Chr4:22941834 | 9.26E-31 | transposed | |
| Mch4g0291 | Mch-Chr4:1872019 | Mch4g2077 | Mch-Chr4:22941834 | 4.73E-16 | transposed | |
| Mch4g1577 | Mch-Chr4:19064676 | Mch4g2077 | Mch-Chr4:22941834 | 2.60E-30 | transposed | |
| Mch5g0018 | Mch-Chr5:147548 | Mch4g2077 | Mch-Chr4:22941834 | 1.17E-38 | transposed | |
| Mch7g0083 | Mch-Chr7:896691 | Mch4g2077 | Mch-Chr4:22941834 | 6.42E-31 | transposed | |
| Mch1g0786 | Mch-Chr1:11528501 | Mch4g2077 | Mch-Chr4:22941834 | 1.97E-123 | wgd | |
| Mch4g2077 | Mch-Chr4:22941834 | Mch5g1773 | Mch-Chr5:18235496 | 2.79E-83 | wgd | |
| Mch4g2077 | Mch-Chr4:22941834 | Mch9g1765 | Mch-Chr9:19578536 | 3.73E-109 | wgd |
Pathway information