Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2111 ATGCCAATTCATAAATTTACACTCGGGACTCCGGGAGAGGCGAGCCAACCCGACGCGATAAAGGCCGCATTTGCCGAATTCTTCTCCATGATCATATTTGTTTTCGCCGGACAAGGATCCGGCTTGGCTTTCAGTAAGCTAACGGACGGTGCATCCGCGACACCGTCGGGGCTGATAATCGCATCTCTTGCTCACGCTTTTGCGTTATTTGTGGCGGTTTCTGTCGGAGCCAATATCTCCGGGGGTCATGTAAATCCGGCAGTTACATTTGGTGTACTCGTTGGTGGAAACATATCGTTTTTTAGAAGCATCTTGTATTGGATCGCTCAATTGCTTGGTTCTGTTGTTGCCTGCTACCTTCTTAAATTTGCCACCGGTGGCCAGGCCACACCAGCATTTTCCTTGTCATCAGGAGTTTCTGTATGGAATGCATTTATTTTTGAGGCAGTGATGACTTTTGGATTAGTGTATACAGTTTATGCAACGGCAGTAGATCCCAAGAAGGAGAATGTGGGCATAATTGCACCAATTGCTATTGGTTTCATTGTGGGTGCTAACATTTTGGTTGGTGGTGCTTTTGATGGCGCTTCCATGAACCCTGCAGTCTCCTTTGGCCCTGCTGTAGTCAGCTGGTCGTGGACTAATCACTGGGTCTACTGGCTTGGTCCAATGGCTGGTGCGGCCATTGCCGCCATTGTCTATGACACCATCTTTATCTGCGATGCCATGCATGAGCCTCTTACACAGTACAATGATTTTTAG 762 47.9 MPIHKFTLGTPGEASQPDAIKAAFAEFFSMIIFVFAGQGSGLAFSKLTDGASATPSGLIIASLAHAFALFVAVSVGANISGGHVNPAVTFGVLVGGNISFFRSILYWIAQLLGSVVACYLLKFATGGQATPAFSLSSGVSVWNAFIFEAVMTFGLVYTVYATAVDPKKENVGIIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPAVVSWSWTNHWVYWLGPMAGAAIAAIVYDTIFICDAMHEPLTQYNDF 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23189488 23191725 + MC04g1538 Mch4g2111 686823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2111 253 CDD MIP 21 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g2111 253 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Mch4g2111 253 PANTHER AQUAPORIN-8 6 244 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Mch4g2111 253 SUPERFAMILY Aquaporin-like 16 242 IPR023271 -
Mch4g2111 253 Gene3D Glycerol uptake facilitator protein. 5 251 IPR023271 -
Mch4g2111 253 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g2111 253 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g2111 253 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g2111 253 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g2111 253 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g2111 253 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch4g2111 253 FunFam Probable aquaporin TIP1-1 4 252 - -
Mch4g2111 253 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2111 Mch-Chr4:23189488 Mch5g1710 Mch-Chr5:17824641 6.38E-115 dispersed
Mch4g2111 Mch-Chr4:23189488 Mch1g0862 Mch-Chr1:12020213 2.73E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2111 K09873 - csv:101222909 455.677