Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g2127 | ATGGAAATTTCCGACGAGTTCACGGCCAAAGCCACCACCTCGAATTCGAACCGCAACAAACCCTACGAAACTAGAGACGGCGGCGAGCTCTCATCCTCCGATAACGAGACCGAAGATGCACATCCCGTTTGTTCCAACATGCTTGCTTCTCTTGCACCTCCAGTATCTCCCATTTTTCCTCTGCAAAGTAAATGTAATGTAGCTATTCAGGCTGATATGGATGATAAATTGGAGACAATACAAAATATATGTCAGAAAATTGTGGACACTACAAACTTGTACTCATTTTCTAAATTGGATGACCAGCAAGTATATTCTCTTATGAGGCTGAGGGAAATTTCTCATCGGGTTATCAGTGACCGAGATTCAAGGGTGACAAAAAATGATGTGATTAGTGCTATGTGCTCTTACATCAACAAGCTGGCAGGTAAATGCAAGGATATTGTTGACCTTGTGAATAGGATGTCAAATAAAGACTTGGACGACCAGCAACTGCAACAATTATCAAGATTAAAGGAGCTTCTATGCGGGATTGTTGATGGGGCTAAAGATGTGGAAACTGAACCTTCCCATATTGTTGAACAGGGCATTGCAAGTGATATGTGGATAACGGAGAGTCTGGAGGTCGAACCAATTGATTCCAGCAATGATGATGTACTTCTTGGAGAGACACAACTTATAATGGTTGAAGATGAACAGGCAGTAGCTGAAGCTAGGCTCGAGAATAAATATTATGACCTGTCACATGTTAAGCACTCTGTTACTTGGCCACCAAATGGTAGCTTAACCTTAGAGTGGGTTCTAGAGTTGATGAAAACATTTGGGGAGTCTTCGAGAAACTACTTGCCCATGGAGTTTCAATTCGTCATGCCAGTTTCTGTGGTAGATGCAATACTAGATGTAGGTGCAAGCATCCTTCACAAGGAACCAAACTGTGTGGAAATTGACTGCCATGGAGAAGTTTCAAATGTTGTTATAGTTGGTGACATTCATGGACATTATCATGACTTGCTTCATCTCTTTGAACTTGCTAACTTACCATCTAAGACCCAGTATTACGTTTTTAATGGCAATTATGTGAACAGAGGAGCATGGGGATTGGAGGTGTTTTTGGTCTTATTGGTGTGGAAGATCTTGATGCCTGATAGAGTATATCTACTCCGTGGAAATCATGAAACCAGAATTTGTACATCGTCCTTCGGTTTTGAGAAAGAAGTAGGGACAAAATATGGGGAGCAAGGTGAAAAAGTATATCACAGGTGTTTGGAAACATTTAAGGAACTTCCTTTGGCTGCAATTATTGCTGGAAAAGTATATACAACCCATGGAGGGTTATTTCGTAAGCCATGCAATCCTGATGTGCAGAATGGCAAGGAAAGGGAGACGCATGAGCTGCGGATTGGATCCTTACAAGACTTATCTAAGCTCGAAAGGTTTTTTATTGATATTCCAACACAAGATGAAGATCCAAATATAATTTTGGCAGATGTATTGTGGTCGGATCCTTCTAAAATAGATGGCTTAAGGAAAAACCAAGTCAGAGGAGCAGGTTTATTATGGGGTCCTGATTCAACAGAAGCATTCTTAAAGCTGTCCAATTTAAAGTTGATCATTAGATCACATGAAGGTCCAGATTCAAGGGATGGTAAGATTGATTTCGATGATATGATAATGGGATATAGCACAGATCACGACAGAGAATCAGGAAAATTATATACTCTATTTAGTGCTCCAGATTTCCCACAGTTTGGCAGGAAGAGTTACAATAATGAGGGAGCATATGCCACTTTGAAGCCTCCGGATTTCGAAACTCCATCCTTCCATACATTTAAAGCCGCAGATAAACCGAAGATAAATGTTTGCTATTTTGGTTGTGAAGGACATGATGTAGATTTAGACTTGACATTAATGGCTCTGGCTGACGTCGTCTCTTCTAAAAACTCTAGTCCTGTTGAGATTCATTCTGGGGTTGATTTTGAGGCATTAGGCATAGTAAACCCACCTTCTTGGAGCATTACATTGACAGATGATGCTACAGGTACCCAAAATGTTCAAATTCCGAAAGCTCCCGTGGTAGAAGGGCTGCCTTTGCCACCAAACATAGAGGAGCCTCACAAGGCTGCTTATGAATACTTCTTGGAGCTCATTGCAGGGCTGAAATTTATGCTTCAAAAAACGGAAAATACGAACAATATGCACATACCTCATCGGAAGAGGAAGAAATTGAATTAG | 2232 | 40.91 | MEISDEFTAKATTSNSNRNKPYETRDGGELSSSDNETEDAHPVCSNMLASLAPPVSPIFPLQSKCNVAIQADMDDKLETIQNICQKIVDTTNLYSFSKLDDQQVYSLMRLREISHRVISDRDSRVTKNDVISAMCSYINKLAGKCKDIVDLVNRMSNKDLDDQQLQQLSRLKELLCGIVDGAKDVETEPSHIVEQGIASDMWITESLEVEPIDSSNDDVLLGETQLIMVEDEQAVAEARLENKYYDLSHVKHSVTWPPNGSLTLEWVLELMKTFGESSRNYLPMEFQFVMPVSVVDAILDVGASILHKEPNCVEIDCHGEVSNVVIVGDIHGHYHDLLHLFELANLPSKTQYYVFNGNYVNRGAWGLEVFLVLLVWKILMPDRVYLLRGNHETRICTSSFGFEKEVGTKYGEQGEKVYHRCLETFKELPLAAIIAGKVYTTHGGLFRKPCNPDVQNGKERETHELRIGSLQDLSKLERFFIDIPTQDEDPNIILADVLWSDPSKIDGLRKNQVRGAGLLWGPDSTEAFLKLSNLKLIIRSHEGPDSRDGKIDFDDMIMGYSTDHDRESGKLYTLFSAPDFPQFGRKSYNNEGAYATLKPPDFETPSFHTFKAADKPKINVCYFGCEGHDVDLDLTLMALADVVSSKNSSPVEIHSGVDFEALGIVNPPSWSITLTDDATGTQNVQIPKAPVVEGLPLPPNIEEPHKAAYEYFLELIAGLKFMLQKTENTNNMHIPHRKRKKLN | 743 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 23315705 | 23328080 | - | MC04g1550 | Mch4g2127 | 686839 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g2127 | 743 | SUPERFAMILY | Metallo-dependent phosphatases | 285 | 619 | IPR029052 | - | |
| Mch4g2127 | 743 | Gene3D | - | 280 | 648 | IPR029052 | - | |
| Mch4g2127 | 743 | MobiDBLite | consensus disorder prediction | 7 | 21 | - | - | |
| Mch4g2127 | 743 | ProSitePatterns | Serine/threonine specific protein phosphatases signature. | 387 | 392 | IPR006186 | GO:0016787(InterPro) | |
| Mch4g2127 | 743 | Pfam | Calcineurin-like phosphoesterase | 323 | 542 | IPR004843 | GO:0016787(InterPro) | |
| Mch4g2127 | 743 | SMART | pp2a_7 | 290 | 614 | IPR006186 | GO:0016787(InterPro) | |
| Mch4g2127 | 743 | PANTHER | SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED | 218 | 621 | IPR051134 | - | |
| Mch4g2127 | 743 | MobiDBLite | consensus disorder prediction | 22 | 36 | - | - | |
| Mch4g2127 | 743 | PRINTS | Serine/threonine phosphatase family signature | 570 | 586 | IPR006186 | GO:0016787(InterPro) | |
| Mch4g2127 | 743 | PRINTS | Serine/threonine phosphatase family signature | 353 | 380 | IPR006186 | GO:0016787(InterPro) | |
| Mch4g2127 | 743 | PRINTS | Serine/threonine phosphatase family signature | 476 | 503 | IPR006186 | GO:0016787(InterPro) | |
| Mch4g2127 | 743 | PRINTS | Serine/threonine phosphatase family signature | 386 | 410 | IPR006186 | GO:0016787(InterPro) | |
| Mch4g2127 | 743 | PRINTS | Serine/threonine phosphatase family signature | 323 | 350 | IPR006186 | GO:0016787(InterPro) | |
| Mch4g2127 | 743 | PRINTS | Serine/threonine phosphatase family signature | 423 | 449 | IPR006186 | GO:0016787(InterPro) | |
| Mch4g2127 | 743 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch10g1834 | Mch-Chr10:17955926 | Mch4g2127 | Mch-Chr4:23315705 | 9.62E-126 | dispersed | |
| Mch4g2127 | Mch-Chr4:23315705 | Mch8g2821 | Mch-Chr8:31110094 | 1.13E-32 | dispersed | |
| Mch4g2122 | Mch-Chr4:23280182 | Mch4g2127 | Mch-Chr4:23315705 | 2.18E-08 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch4g2127 | K04460 | - | csv:101211172 | 1315.06 |