Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch4g2138 | ATGGTTTTCTCATCAGTTCCTGTGTTTCTTGATCCACCCAATTGGCCTACTCAGCAGCCAAATCATCTCCAAGGGAGTGGTGGTGAGAATACTACTCAACACCTCCCTCCTCCGGCTCCGCCAGCTGGTGGAGGCGGTGGCGGTAATAATGGAAGTGGCGGACCTGGGTCGATTAGGCCAGGCTCGATGACGGACCGAGCCAGGCTGGCAAAAATACCGCAACCAGAAGCCGGACTAAAATGCCCGAGATGTGAATCCTCAAACACAAAGTTTTGTTACTTCAACAACTACAGCCTGACTCAGCCGCGCCACTTTTGCAAGACCTGTCGGCGGTACTGGACGAGAGGCGGCGCGATGAGGAACGTACCGGTGGGCGGCGGGTGTCGCCGGTCGAGCAAAAGAAGCAAAGGGAGCAGCAACAGGTCAAAATCTCCGGCGGGTTCAAGCACTTCCACAAGCACAGTGTCATCAAACAGTTGCACAACCGATATAATTAGCCATCAACTGGCTCCTCCTCCGCCCACCCACTTGCCCTTTTTACCCCCTCTCCACAATCTCACCGATTTTGGGAACATTGGCTTGAACTTCGAAGGGCTTCAAATTCCTTCACTGCCCTCATCAGGTGGCGTAGAATCCTCAATTTTATCAAGTGGGGTTACGGAAAATCAGCAATGGAAGATACCCTTTTTCGCAAATTTGCAGCAACAAAATGGGATGTATTCCAATTTCATGGCTGAGGATCATAATCAAAATCATGCTGATTTCTCCAATTATCAACGTTTGTCAAAGCCATTACTGGAAACTGGGTTTTCTACTACTCATCAGATGGGGAACAATAGTAATAACAATAGCATGAAAATTATGGATCAGGACACACAAGGGATTAACATTTTGTCGAGGAATTTTCTGGGAATTCAACCAAATGAGCAGTTCTGGAGTAATTCCACTACTACAACTACTGCGGGAAATATTGCATGGACGGATCAGATTTCAGATCATTTCAATTCATCTTCTTCCACCAGCCATCTCTTGTAA | 1035 | 47.73 | MVFSSVPVFLDPPNWPTQQPNHLQGSGGENTTQHLPPPAPPAGGGGGGNNGSGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESSNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSKGSSNRSKSPAGSSTSTSTVSSNSCTTDIISHQLAPPPPTHLPFLPPLHNLTDFGNIGLNFEGLQIPSLPSSGGVESSILSSGVTENQQWKIPFFANLQQQNGMYSNFMAEDHNQNHADFSNYQRLSKPLLETGFSTTHQMGNNSNNNSMKIMDQDTQGINILSRNFLGIQPNEQFWSNSTTTTTAGNIAWTDQISDHFNSSSSTSHLL | 344 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 23362067 | 23364402 | - | MC04g1561 | Mch4g2138 | 686850 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch4g2138 | 344 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 67 | 267 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch4g2138 | 344 | MobiDBLite | consensus disorder prediction | 138 | 157 | - | - | |
| Mch4g2138 | 344 | ProSitePatterns | Zinc finger Dof-type signature. | 81 | 117 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Mch4g2138 | 344 | MobiDBLite | consensus disorder prediction | 1 | 63 | - | - | |
| Mch4g2138 | 344 | ProSiteProfiles | Zinc finger Dof-type profile. | 79 | 133 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Mch4g2138 | 344 | MobiDBLite | consensus disorder prediction | 120 | 157 | - | - | |
| Mch4g2138 | 344 | Pfam | Dof domain, zinc finger | 79 | 133 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
| Mch4g2138 | 344 | MobiDBLite | consensus disorder prediction | 11 | 33 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch2g0909 | Mch-Chr2:6180463 | Mch4g2138 | Mch-Chr4:23362067 | 1.37E-48 | dispersed | |
| Mch4g2138 | Mch-Chr4:23362067 | Mch5g1836 | Mch-Chr5:18631446 | 1.46E-49 | dispersed | |
| Mch1g0729 | Mch-Chr1:11160266 | Mch4g2138 | Mch-Chr4:23362067 | 1.10E-45 | wgd | |
| Mch4g2138 | Mch-Chr4:23362067 | Mch9g1562 | Mch-Chr9:17923634 | 1.66E-57 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43254 | PF02701 | zf-Dof | 5.00E-31 | No_clan | Mch | TF |
Pathway information