Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2154 ATGGCAGATACAGAGGACATTCAGCCTCTCGTATGTGATAATGGAACAGGAATGGTTAAGGCTGGATTTGCTGGGGATGATGCTCCCCGAGCAGTCTTCCCTAGCATTGTTGGCCGTCCTCGTCACACCGGTGTGATGGTCGGCATGGGCCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCTAAGCGTGGTATTTTGACACTAAAATACCCAATTGAGCATGGTATTGTGAGCAACTGGGATGACATGGAAAAAATCTGGCATCACACGTTCTATAACGAGCTTCGTGTTGCGCCAGAGGAGCACCCTGTACTCCTAACTGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAAAAGATGACCCAAATCATGTTTGAGACCTTCAACACTCCTGCCATGTATGTGGCTATTCAAGCTGTTCTCTCACTATATGCCAGTGGTCGAACAACTGGAATTGTGTTGGACTCTGGGGATGGTGTGAGCCATACAGTCCCCATATATGAGGGTTATGCTCTCCCACATGCCATTCTTCGACTTGACCTTGCTGGCCGTGATCTTACTGATAACTTGATGAAAATTCTGACGGAGCGTGGATATTCGTTCACTACCTCAGCAGAGCGTGAAATTGTGAGGGATATGAAGGAAAAGCTTTCATATATTGCCCTTGACTATGAGCAGGAACTCGAAACTTCCAAAACCAGCTCCTCAGTTGAAAAGAGCTATGAGTTGCCTGATGGGCAAGTCATCACCATTGGCTCTGAGCGTTTTAGATGCCCGGAAGTGCTTTTCCAGCCATCCATGATCGGAATGGAAGCAGCAGGCATTCATGAAACCACATATAATTCTATCATGAAGTGCGACGTTGATATCAGGAAGGATCTGTATGGCAACATTGTACTTTCTGGTGGTTCGACCATGTTTACAGGCATCGCTGATAGAATGAGCAAGGAAATCTCCGCACTCGCTCCGAGCAGCATGAAGATTAAGGTGGTGGCACCTCCAGAGAGAAAATACAGTGTCTGGATTGGTGGTTCTATCTTGGCCTCTTTGAGTACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTATGATGAATCTGGGCCATCGATTGTGCACAGGAAATGCTTCTAA 1134 47.09 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTSAEREIVRDMKEKLSYIALDYEQELETSKTSSSVEKSYELPDGQVITIGSERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23417767 23421235 + MC04g1575 Mch4g2154 686866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2154 377 PANTHER ACTIN 8 369 IPR004000 GO:0005737(PANTHER)
Mch4g2154 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Mch4g2154 377 SMART actin_3 7 377 IPR004000 -
Mch4g2154 377 FunFam Actin, alpha skeletal muscle 256 330 - -
Mch4g2154 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Mch4g2154 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Mch4g2154 377 FunFam Actin, alpha skeletal muscle 3 175 - -
Mch4g2154 377 PRINTS Actin signature 51 62 IPR004000 -
Mch4g2154 377 PRINTS Actin signature 63 85 IPR004000 -
Mch4g2154 377 PRINTS Actin signature 142 161 IPR004000 -
Mch4g2154 377 PRINTS Actin signature 28 37 IPR004000 -
Mch4g2154 377 PRINTS Actin signature 117 130 IPR004000 -
Mch4g2154 377 PRINTS Actin signature 238 254 IPR004000 -
Mch4g2154 377 Gene3D - 140 340 - -
Mch4g2154 377 Gene3D - 10 371 - -
Mch4g2154 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Mch4g2154 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Mch4g2154 377 FunFam Actin, muscle 182 273 - -
Mch4g2154 377 Pfam Actin 5 377 IPR004000 -
Mch4g2154 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Mch4g2154 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Mch4g2154 377 FunFam Actin, alpha skeletal muscle 331 377 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2154 Mch-Chr4:23417767 Mch5g1440 Mch-Chr5:15488245 7.15E-273 dispersed
Mch9g0563 Mch-Chr9:4112201 Mch4g2154 Mch-Chr4:23417767 1.29E-62 transposed
Mch9g1563 Mch-Chr9:17932457 Mch4g2154 Mch-Chr4:23417767 1.83E-275 transposed
Mch1g0721 Mch-Chr1:11115765 Mch4g2154 Mch-Chr4:23417767 2.05E-272 wgd
Mch4g2154 Mch-Chr4:23417767 Mch9g1551 Mch-Chr9:17789228 7.41E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2154 K10355 - csv:101220611 743.036