Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2162 ATGGCGGCAACTATTTCAAGAAATTCAGTGATATTATTGTCTGTGTTGGTAATTATAATGTCGTTAGTTGTGGAAGGCAGAGTTGCGGGAAGTTTCAGCAGTGGGCCGTGGCAGAGCGCCCACGCCACATTCTACGGTGGCAGTGACGCCTCTGGCACTATGGGTGGGGCGTGCGGTTATGGGAATCTGTACAGCCAGGGGTACGGCGTGAACACGGCGGCGCTGAGTACGGCCCTGTTTAACGACGGCGTCAGCTGCGGGGCGTGCTTTGAGATCAAGTGTGTGAACGACCCGCAATGGTGCCACGCTGGTAACCCCTCCATCTTTGTGACGGCAACCAATTTTTGTCCGCCGAATTACGCTCTGCCCAATGACAATGGCGGCTGGTGCAACCCTCCCCGCCCTCATTTTGACCTTTCCATGCCCATGTTCCTCAAGATAGCCGAGTATCGCGCCGGAATCGTCCCAGTCTCATTTCGTCGCGTGGCGTGCCGGAAGGAGGGAGGGATGAGGTTCACGATCAACGGGTTCAAATACTTCAACTTGGTTTTGATCAGCAACGTGGCGGGTGCAGGGGATATCGTGAGCGCGAGCATAAAGGGGGCGAATACAGGGTGGATGAGGATGACACGTAATTGGGGTCAAAACTGGCAGTCAAACGCCGTTTTGGTGGGCCAGTCCCTGTCCTTCTCCGTCAAAGCAAGCGACGGCCGGACTTCCACTTCATGGAACATCGTCCCTTCTGATTGGCAGTTCGGTCAAACTTTCGCCGGCACTAATTTCAGATTCTAA 792 54.67 MAATISRNSVILLSVLVIIMSLVVEGRVAGSFSSGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNDGVSCGACFEIKCVNDPQWCHAGNPSIFVTATNFCPPNYALPNDNGGWCNPPRPHFDLSMPMFLKIAEYRAGIVPVSFRRVACRKEGGMRFTINGFKYFNLVLISNVAGAGDIVSASIKGANTGWMRMTRNWGQNWQSNAVLVGQSLSFSVKASDGRTSTSWNIVPSDWQFGQTFAGTNFRF 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23468771 23469972 - MC04g1583 Mch4g2162 686874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2162 263 Gene3D - 22 165 IPR036908 -
Mch4g2162 263 PANTHER EXPANSIN-A15 16 260 IPR002963 GO:0009664(InterPro)
Mch4g2162 263 FunFam Expansin 26 165 - -
Mch4g2162 263 SUPERFAMILY Barwin-like endoglucanases 36 187 IPR036908 -
Mch4g2162 263 CDD DPBB_EXPA_N 36 164 - -
Mch4g2162 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 258 IPR007117 -
Mch4g2162 263 Pfam Lytic transglycolase 72 159 IPR009009 -
Mch4g2162 263 PRINTS Expansin signature 108 118 IPR002963 GO:0009664(InterPro)
Mch4g2162 263 PRINTS Expansin signature 127 144 IPR002963 GO:0009664(InterPro)
Mch4g2162 263 PRINTS Expansin signature 180 201 IPR002963 GO:0009664(InterPro)
Mch4g2162 263 PRINTS Expansin signature 215 236 IPR002963 GO:0009664(InterPro)
Mch4g2162 263 PRINTS Expansin signature 67 81 IPR002963 GO:0009664(InterPro)
Mch4g2162 263 PRINTS Expansin signature 244 260 IPR002963 GO:0009664(InterPro)
Mch4g2162 263 PRINTS Expansin signature 94 105 IPR002963 GO:0009664(InterPro)
Mch4g2162 263 PRINTS Expansin signature 144 157 IPR002963 GO:0009664(InterPro)
Mch4g2162 263 PRINTS Expansin signature 168 180 IPR002963 GO:0009664(InterPro)
Mch4g2162 263 FunFam Expansin 169 261 - -
Mch4g2162 263 Gene3D - 170 262 IPR036749 -
Mch4g2162 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576(InterPro)
Mch4g2162 263 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576(InterPro)
Mch4g2162 263 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576(InterPro)
Mch4g2162 263 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
Mch4g2162 263 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576(InterPro)
Mch4g2162 263 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576(InterPro)
Mch4g2162 263 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Mch4g2162 263 SUPERFAMILY PHL pollen allergen 166 257 IPR036749 -
Mch4g2162 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 169 IPR007112 -
Mch4g2162 263 SMART dpbb_1 72 159 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0893 Mch-Chr2:6077979 Mch4g2162 Mch-Chr4:23468771 1.18E-160 dispersed
Mch3g0241 Mch-Chr3:3356087 Mch4g2162 Mch-Chr4:23468771 3.06E-154 dispersed
Mch4g2162 Mch-Chr4:23468771 Mch9g1554 Mch-Chr9:17825037 1.16E-160 dispersed
Mch1g0714 Mch-Chr1:11069378 Mch4g2162 Mch-Chr4:23468771 5.80E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2162 - - - 0.0