Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch4g2169 ATGGCTTCAAACTCCATGAATCCCTTCGTCATTCTGCTCCTCCTGGTCATCTCCTTCTCCGCCGTGGCTTCCTTTGAGTTCCAAGTCGGTGGCGCCCGGGGGTGGGTGGTGCCGCCGGCCAACGACAGCAAAATCTACAACGATTGGGCCTCAGAAAACAGGTTCCGAGGCGGCGACACCGTCCGTTTCCGGTACAAGAAGGATTCCGTGATGGAAGTAACAGAAGAAGAATACAAAAGGTGCAACTCCACACAGCCGAGCTTCTTCTCGAACACCGGCAACACGGTGTTCAATTTGGGGCGGTCGGGGACTTTCTACTTCATCAGCGGCGCCAATGGGCACTGCCAAAGAGGGCAGAGGATGATCGTGAAGGTCCTGACCGAAGACGATTCTTCCTCGAACCCTTCTCAGAAATCCTCTGCTGCGAGTGCAAGGGCTCGAATTTCTTCGCTAGGGTTTCTCAAATTTGTCTCTGCTCAGTTGGCTCTGTCGTGCTTTGCTTCGATTCTGCTTTAA 516 53.68 MASNSMNPFVILLLLVISFSAVASFEFQVGGARGWVVPPANDSKIYNDWASENRFRGGDTVRFRYKKDSVMEVTEEEYKRCNSTQPSFFSNTGNTVFNLGRSGTFYFISGANGHCQRGQRMIVKVLTEDDSSSNPSQKSSAASARARISSLGFLKFVSAQLALSCFASILL 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 23524632 23526007 - MC04g1590 Mch4g2169 686881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch4g2169 171 ProSiteProfiles Phytocyanin domain profile. 25 127 IPR003245 GO:0009055(InterPro)
Mch4g2169 171 FunFam Early nodulin-like protein 1 24 130 - -
Mch4g2169 171 Gene3D - 24 160 IPR008972 -
Mch4g2169 171 PANTHER BLUE COPPER PROTEIN 17 133 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Mch4g2169 171 SUPERFAMILY Cupredoxins 25 126 IPR008972 -
Mch4g2169 171 CDD OsENODL1_like 25 126 IPR041846 -
Mch4g2169 171 Pfam Plastocyanin-like domain 44 119 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch4g2169 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1655 Mch-Chr3:18294608 Mch4g2169 Mch-Chr4:23524632 2.52E-44 dispersed
Mch4g2169 Mch-Chr4:23524632 Mch8g0503 Mch-Chr8:3563419 2.88E-26 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch11g1162 . 11 128 Phytocyanin Superfamily AT3G20570 59.7 3.8e-37 151.8
Mch4g2169 . 19 140 Phytocyanin Superfamily AT1G48940 53.7 7.3e-37 150.6
Mch8g2439 . 31 140 Phytocyanin Superfamily AT3G01070 66.7 8.1e-38 153.7
Mch8g0503 . 8 172 Phytocyanin Superfamily AT2G25060 54.5 1.4e-43 172.9
Mch8g2439 . 28 159 Phytocyanin Superfamily AT5G15350 61.7 2.1e-44 175.6
Mch8g0503 . 6 172 Phytocyanin Superfamily AT4G31840 52.9 2.5e-45 178.7
Mch4g2169 . 19 140 Phytocyanin Superfamily AT1G48940 53.7 7.3e-37 150.6
Mch11g1162 . 11 128 Phytocyanin Superfamily AT3G20570 59.7 3.8e-37 151.8
Mch8g0503 . 11 171 Phytocyanin Superfamily AT5G25090 51.2 1.4e-38 156.4
Mch8g0503 . 8 172 Phytocyanin Superfamily AT2G25060 54.5 1.4e-43 172.9
Mch8g0503 . 6 172 Phytocyanin Superfamily AT4G31840 52.9 2.5e-45 178.7
Mch8g2439 . 31 140 Phytocyanin Superfamily AT3G01070 66.7 8.1e-38 153.7
Mch8g2439 . 28 159 Phytocyanin Superfamily AT5G15350 61.7 2.1e-44 175.6
Mch6g1074 . 26 131 Phytocyanin Superfamily AT2G27035 61.3 2.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000973 5 4 1 1 2 2 4 2 2 3 3 2 3 3 3 3 2 2 5 3 2 4 3 3 2 3 2 3 2 3 82